BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521825.2.1
(2812 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36370.1|H36370 14892 Lambda-PRL2 Arabidopsis thaliana c... 54 1e-004
gb|AV442128.1|AV442128 AV442128 Arabidopsis thaliana above-... 54 1e-004
gb|U22428.1|ATU22428 Arabidopsis thaliana starch branching ... 54 1e-004
emb|AX506177.1| Sequence 872 from Patent WO0216655 54 1e-004
emb|AX651816.1| Sequence 672 from Patent WO03000898 54 1e-004
dbj|AK117729.1| Arabidopsis thaliana At5g03650 mRNA for put... 54 1e-004
ref|NM_120446.2| Arabidopsis thaliana SBE2.2 (STARCH BRANCH... 54 1e-004
gb|CB257388.1|CB257388 96-E012741-027-007-O23-T7R MPIZ-ADIS... 52 5e-004
gb|U18817.1|ATU18817 Arabidopsis thaliana starch branching ... 52 5e-004
emb|AX412751.1| Sequence 515 from Patent WO0222675 52 5e-004
emb|AX412752.1| Sequence 516 from Patent WO0222675 52 5e-004
gb|AY136411.1| Arabidopsis thaliana unknown protein (At2g36... 52 5e-004
emb|AX505642.1| Sequence 337 from Patent WO0216655 52 5e-004
gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O1... 52 5e-004
emb|CQ804284.1| Sequence 695 from Patent WO2004035798 52 5e-004
emb|AJ000497.1|ATSBE21 Arabidopsis thaliana Sbe2.1 gene 52 5e-004
ref|NM_129196.2| Arabidopsis thaliana SBE2.1 (STARCH BRANCH... 52 5e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 52 5e-004
gb|AU238577.1|AU238577 AU238577 RAFL17 Arabidopsis thaliana... 48 0.008
gb|N37134.1|N37134 18469 Lambda-PRL2 Arabidopsis thaliana c... 46 0.033
gb|AI993785.1|AI993785 701514536 A. thaliana, Ohio State cl... 44 0.13
>gb|H36370.1|H36370 14892 Lambda-PRL2 Arabidopsis thaliana cDNA clone 178K2T7, mRNA
sequence
Length = 484
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 130 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 71
Query: 1026 catcacc 1032
| |||||
Sbjct: 70 cttcacc 64
>gb|AV442128.1|AV442128 AV442128 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APZ36d06_r 5', mRNA
sequence
Length = 569
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 375 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 316
Query: 1026 catcacc 1032
| |||||
Sbjct: 315 cttcacc 309
>gb|U22428.1|ATU22428 Arabidopsis thaliana starch branching enzyme class II mRNA (sbe2-2),
partial cds
Length = 2542
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 1924 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 1865
Query: 1026 catcacc 1032
| |||||
Sbjct: 1864 cttcacc 1858
>emb|AX506177.1| Sequence 872 from Patent WO0216655
Length = 2418
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 1939 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 1880
Query: 1026 catcacc 1032
| |||||
Sbjct: 1879 cttcacc 1873
>emb|AX651816.1| Sequence 672 from Patent WO03000898
Length = 2418
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 1939 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 1880
Query: 1026 catcacc 1032
| |||||
Sbjct: 1879 cttcacc 1873
>dbj|AK117729.1| Arabidopsis thaliana At5g03650 mRNA for putative 1,4-alpha-glucan
branching enzyme protein soform SBE2.2, complete cds,
clone: RAFL17-40-N21
Length = 825
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 176 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 117
Query: 1026 catcacc 1032
| |||||
Sbjct: 116 cttcacc 110
>ref|NM_120446.2| Arabidopsis thaliana SBE2.2 (STARCH BRANCHING ENZYME 2.2) AT5G03650
(SBE2.2) mRNA, complete cds
Length = 2575
Score = 54.0 bits (27), Expect = 1e-004
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
Sbjct: 1925 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatttaagtaac 1866
Query: 1026 catcacc 1032
| |||||
Sbjct: 1865 cttcacc 1859
>gb|CB257388.1|CB257388 96-E012741-027-007-O23-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772O237Q 5-PRIME, mRNA sequence
Length = 621
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 262 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 213
>gb|U18817.1|ATU18817 Arabidopsis thaliana starch branching enzyme class II (sbe2-1) mRNA,
partial cds
Length = 2668
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2030 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 1981
>emb|AX412751.1| Sequence 515 from Patent WO0222675
Length = 2577
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2042 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 1993
>emb|AX412752.1| Sequence 516 from Patent WO0222675
Length = 2577
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2042 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 1993
>gb|AY136411.1| Arabidopsis thaliana unknown protein (At2g36390) mRNA, complete cds
Length = 2759
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2088 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 2039
>emb|AX505642.1| Sequence 337 from Patent WO0216655
Length = 2577
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2042 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 1993
>gb|AC006919.6| Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete
sequence
Length = 104364
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 18369 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 18320
>emb|CQ804284.1| Sequence 695 from Patent WO2004035798
Length = 2577
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2042 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 1993
>emb|AJ000497.1|ATSBE21 Arabidopsis thaliana Sbe2.1 gene
Length = 7020
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 6044 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 5995
>ref|NM_129196.2| Arabidopsis thaliana SBE2.1 (STARCH BRANCHING ENZYME 2.1) AT2G36390
(SBE2.1) mRNA, complete cds
Length = 2768
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 2088 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 2039
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 52.0 bits (26), Expect = 5e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 968 cttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
||||| ||||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 15276400 cttgggaagtcgatccattctgggtgtccaaattcgtttcccatgaaatt 15276351
>gb|AU238577.1|AU238577 AU238577 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-N21 5',
mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.008
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaatt 1017
|||| ||||| |||||||||||||| || || || || ||||||||||||||
Sbjct: 177 ctctgggaaaatcaatccattctggatgtccgaattcgtttcccataaaatt 126
>gb|N37134.1|N37134 18469 Lambda-PRL2 Arabidopsis thaliana cDNA clone 208D17T7, mRNA
sequence
Length = 491
Score = 46.1 bits (23), Expect = 0.033
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 966 ctcttggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagc 1025
|||| ||||| |||||||||||||| || || || || || ||||||||||| ||||| |
Sbjct: 302 ctctgggaaaatcaatccattctggatgtccgaattcgttccccataaaatttaagtaac 243
Query: 1026 catcacc 1032
| |||||
Sbjct: 242 cttcacc 236
>gb|AI993785.1|AI993785 701514536 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA
clone 701514536, mRNA sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.13
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 971 ggaaagtcaatccattctgggtgaccaaactcatttcccataaaattcaagtagccatca 1030
||||| |||| ||||||||| || || || || |||||||||||||| ||||| || |||
Sbjct: 450 ggaaaatcaagccattctggatgcccgaattcgtttcccataaaatttaagtaaccttca 391
Query: 1031 cc 1032
||
Sbjct: 390 cc 389
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,338,468
Number of Sequences: 1013581
Number of extensions: 1338468
Number of successful extensions: 97222
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96596
Number of HSP's gapped (non-prelim): 626
length of query: 2812
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2791
effective length of database: 887,655,671
effective search space: 2477446977761
effective search space used: 2477446977761
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)