BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV821843.1|AV821843 AV821843 RAFL4 Arabidopsis thaliana ... 80 1e-012
gb|AV829598.1|AV829598 AV829598 RAFL9 Arabidopsis thaliana ... 80 1e-012
gb|CF652642.1|CF652642 68-L020135-066-001-G17-SP6P MPIZ-ADI... 80 1e-012
gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-AD... 80 1e-012
gb|AV539060.1|AV539060 AV539060 Arabidopsis thaliana roots ... 80 1e-012
gb|AV550365.1|AV550365 AV550365 Arabidopsis thaliana roots ... 80 1e-012
gb|AV550631.1|AV550631 AV550631 Arabidopsis thaliana roots ... 80 1e-012
gb|AV551773.1|AV551773 AV551773 Arabidopsis thaliana roots ... 80 1e-012
gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana ... 80 1e-012
gb|CK121692.1|CK121692 202c15.p1 AtM1 Arabidopsis thaliana ... 80 1e-012
gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mR... 80 1e-012
gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydr... 80 1e-012
gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydr... 80 1e-012
gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mR... 80 1e-012
gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, comple... 80 1e-012
emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cD... 80 1e-012
emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cD... 80 1e-012
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 80 1e-012
emb|CQ804646.1| Sequence 1057 from Patent WO2004035798 80 1e-012
emb|CQ805684.1| Sequence 2095 from Patent WO2004035798 80 1e-012
emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome... 80 1e-012
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 80 1e-012
ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/ ... 80 1e-012
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 80 1e-012
gb|BE520306.1|BE520306 M11D2STM Arabidopsis developing seed... 74 6e-011
gb|BP811416.1|BP811416 BP811416 RAFL16 Arabidopsis thaliana... 74 6e-011
gb|BP810730.1|BP810730 BP810730 RAFL16 Arabidopsis thaliana... 72 2e-010
gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Ara... 66 1e-008
gb|AV552264.1|AV552264 AV552264 Arabidopsis thaliana roots ... 60 9e-007
gb|BP840226.1|BP840226 BP840226 RAFL19 Arabidopsis thaliana... 60 9e-007
gb|BP850522.1|BP850522 BP850522 RAFL21 Arabidopsis thaliana... 60 9e-007
gb|BP861319.1|BP861319 BP861319 RAFL21 Arabidopsis thaliana... 60 9e-007
gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana ... 58 4e-006
gb|BP859494.1|BP859494 BP859494 RAFL21 Arabidopsis thaliana... 58 4e-006
gb|AV550658.1|AV550658 AV550658 Arabidopsis thaliana roots ... 48 0.004
gb|AV551095.1|AV551095 AV551095 Arabidopsis thaliana roots ... 48 0.004
gb|AV552849.1|AV552849 AV552849 Arabidopsis thaliana roots ... 48 0.004
gb|CL508133.1|CL508133 SAIL_792_F05.v3 SAIL Collection Arab... 44 0.055
gb|BP843352.1|BP843352 BP843352 RAFL21 Arabidopsis thaliana... 42 0.22
>gb|AV821843.1|AV821843 AV821843 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-C19 5',
mRNA sequence
Length = 688
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 272 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 331
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 332 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 391
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 392 accgctcttgctctccctgaagacggca 419
>gb|AV829598.1|AV829598 AV829598 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-48-L18 5',
mRNA sequence
Length = 578
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 271 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 330
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 331 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 390
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 391 accgctcttgctctccctgaagacggca 418
>gb|CF652642.1|CF652642 68-L020135-066-001-G17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001G171Q 5-PRIME, mRNA sequence
Length = 567
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 260 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 319
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 320 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 379
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 380 accgctcttgctctccctgaagacggca 407
>gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001G171Q 5-PRIME, mRNA sequence
Length = 924
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 260 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 319
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 320 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 379
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 380 accgctcttgctctccctgaagacggca 407
>gb|AV539060.1|AV539060 AV539060 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ126c06F 3', mRNA sequence
Length = 600
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 251 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 310
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 311 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 370
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 371 accgctcttgctctccctgaagacggca 398
>gb|AV550365.1|AV550365 AV550365 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111d01R 5', mRNA sequence
Length = 553
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 247 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 306
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 307 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 366
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 367 accgctcttgctctccctgaagacggca 394
>gb|AV550631.1|AV550631 AV550631 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ115b08R 5', mRNA sequence
Length = 544
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 237 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 296
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 297 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 356
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 357 accgctcttgctctccctgaagacggca 384
>gb|AV551773.1|AV551773 AV551773 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ130e08R 5', mRNA sequence
Length = 559
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 251 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 310
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 311 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 370
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 371 accgctcttgctctccctgaagacggca 398
>gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H16214
5-PRIME, mRNA sequence
Length = 789
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 258 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 317
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 318 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 377
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 378 accgctcttgctctccctgaagacggca 405
>gb|CK121692.1|CK121692 202c15.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C15202
5-PRIME, mRNA sequence
Length = 763
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 255 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 314
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 315 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 374
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 375 accgctcttgctctccctgaagacggca 402
>gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mRNA, complete cds
Length = 1026
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 270 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 329
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 330 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 389
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 390 accgctcttgctctccctgaagacggca 417
>gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydrogenase - like protein
(At4g34050) mRNA, complete cds
Length = 999
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 272 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 331
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 332 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 391
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 392 accgctcttgctctccctgaagacggca 419
>gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydrogenase-like protein
(At4g34050) mRNA, complete cds
Length = 815
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 205 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 264
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 265 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 324
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 325 accgctcttgctctccctgaagacggca 352
>gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mRNA, complete cds
Length = 780
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 205 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 264
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 265 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 324
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 325 accgctcttgctctccctgaagacggca 352
>gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, complete sequence
Length = 1033
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 274 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 333
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 334 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 393
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 394 accgctcttgctctccctgaagacggca 421
>emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB44ZH02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1024
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 248 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 307
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 308 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 367
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 368 accgctcttgctctccctgaagacggca 395
>emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZC07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1003
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 248 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 307
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 308 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 367
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 368 accgctcttgctctccctgaagacggca 395
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 12223918 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 12223977
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 12223978 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 12224037
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 12224038 accgctcttgctctccctgaagacggca 12224065
>emb|CQ804646.1| Sequence 1057 from Patent WO2004035798
Length = 780
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 205 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 264
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 265 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 324
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 325 accgctcttgctctccctgaagacggca 352
>emb|CQ805684.1| Sequence 2095 from Patent WO2004035798
Length = 780
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 205 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 264
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 265 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 324
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 325 accgctcttgctctccctgaagacggca 352
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
Length = 94091
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 14640 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 14699
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 14700 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 14759
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 14760 accgctcttgctctccctgaagacggca 14787
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 144689 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 144748
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 144749 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 144808
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 144809 accgctcttgctctccctgaagacggca 144836
>ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/
S-adenosylmethionine-dependent methyltransferase
AT4G34050 transcript variant AT4G34050.1 mRNA, complete
cds
Length = 1091
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 273 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 332
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 333 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 392
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 393 accgctcttgctctccctgaagacggca 420
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 79.8 bits (40), Expect = 1e-012
Identities = 121/148 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 16311136 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 16311195
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 16311196 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 16311255
Query: 435 accgcgctcgcactcccggaggacggca 462
||||| || || ||||| || |||||||
Sbjct: 16311256 accgctcttgctctccctgaagacggca 16311283
>gb|BE520306.1|BE520306 M11D2STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M11D2 5', mRNA sequence
Length = 308
Score = 73.8 bits (37), Expect = 6e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 169 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 228
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 229 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 288
Query: 435 accgc 439
|||||
Sbjct: 289 accgc 293
>gb|BP811416.1|BP811416 BP811416 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-30-J20 5',
mRNA sequence
Length = 403
Score = 73.8 bits (37), Expect = 6e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 272 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 331
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
||| | ||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct: 332 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcc 391
Query: 435 accgc 439
|||||
Sbjct: 392 accgc 396
>gb|BP810730.1|BP810730 BP810730 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-27-E05 5',
mRNA sequence
Length = 408
Score = 71.9 bits (36), Expect = 2e-010
Identities = 102/124 (82%)
Strand = Plus / Plus
Query: 316 catggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagc 375
|||||||| | |||||||| || || || || || |||||| | |||||||| |||||||
Sbjct: 271 catggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaagc 330
Query: 376 tcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcca 435
|| | ||||||||| || ||||||||||| || ||||| |||||||| || |||||||
Sbjct: 331 tcgttaacgccaagaacacaatggagatcggagtttacactggctactctcttctcgcca 390
Query: 436 ccgc 439
||||
Sbjct: 391 ccgc 394
>gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 748
Score = 65.9 bits (33), Expect = 1e-008
Identities = 126/157 (80%)
Strand = Plus / Plus
Query: 306 gccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatg 365
||||| || ||||||||| | |||||||| || || || || || |||||| | ||||||
Sbjct: 178 gccaaacatccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatg 237
Query: 366 ctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcg 425
|| ||||||| | | |||| |||| || ||||||||||| || ||||| ||||||||
Sbjct: 238 cttatcaagcacgttaacgccgagaacacaatggagatcggagtttacactggctactct 297
Query: 426 ctcctcgccaccgcgctcgcactcccggaggacggca 462
|| ||||||||||| || || ||||| || |||||||
Sbjct: 298 cttctcgccaccgctcttgctctccctgaagacggca 334
>gb|AV552264.1|AV552264 AV552264 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ25d06R 5', mRNA sequence
Length = 281
Score = 60.0 bits (30), Expect = 9e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 165 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 224
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactc 424
||| | ||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 225 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactc 274
>gb|BP840226.1|BP840226 BP840226 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-29-I21 5',
mRNA sequence
Length = 388
Score = 60.0 bits (30), Expect = 9e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 272 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 331
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactc 424
||| | ||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 332 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactc 381
>gb|BP850522.1|BP850522 BP850522 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-13-C19 5',
mRNA sequence
Length = 384
Score = 60.0 bits (30), Expect = 9e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 269 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 328
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactc 424
||| | ||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 329 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactc 378
>gb|BP861319.1|BP861319 BP861319 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-47-D22 5',
mRNA sequence
Length = 386
Score = 60.0 bits (30), Expect = 9e-007
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 272 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 331
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactc 424
||| | ||||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 332 ctcgttaacgccaagaacacaatggagatcggagtttacactggctactc 381
>gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-C19 3',
mRNA sequence
Length = 681
Score = 58.0 bits (29), Expect = 4e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 362 catgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggcta 421
|||||| ||||||||| | ||||||||| || ||||||||||| || ||||| |||||
Sbjct: 681 catgcttatcaagctcgttaacgccaagaacacaatggagatcggagtttacactggcta 622
Query: 422 ctcgctcctcgccaccg 438
||| || ||||||||||
Sbjct: 621 ctctcttctcgccaccg 605
>gb|BP859494.1|BP859494 BP859494 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-N23 5',
mRNA sequence
Length = 398
Score = 58.0 bits (29), Expect = 4e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 383 cgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgc 439
||||||||| || ||||||||||| || ||||| |||||||| || |||||||||||
Sbjct: 340 cgccaagaacacaatggagatcggagtttacactggctactctcttctcgccaccgc 396
>gb|AV550658.1|AV550658 AV550658 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ115e12R 5', mRNA sequence
Length = 344
Score = 48.1 bits (24), Expect = 0.004
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 251 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 310
Query: 375 ctcatcggcgccaagaagaccatggagatcgg 406
||| | ||||||||| || |||||||||||
Sbjct: 311 ctcgttaacgccaagaacacaatggagatcgg 342
>gb|AV551095.1|AV551095 AV551095 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121b07R 5', mRNA sequence
Length = 337
Score = 48.1 bits (24), Expect = 0.004
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 244 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 303
Query: 375 ctcatcggcgccaagaagaccatggagatcgg 406
||| | ||||||||| || |||||||||||
Sbjct: 304 ctcgttaacgccaagaacacaatggagatcgg 335
>gb|AV552849.1|AV552849 AV552849 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ47a03R 5', mRNA sequence
Length = 344
Score = 48.1 bits (24), Expect = 0.004
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 315 ccatggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaag 374
||||||||| | |||||||| || || || || || |||||| | |||||||| ||||||
Sbjct: 251 ccatggaacataatgaccacatcagctgatgaaggacagttcttaaacatgcttatcaag 310
Query: 375 ctcatcggcgccaagaagaccatggagatcgg 406
||| | ||||||||| || |||||||||||
Sbjct: 311 ctcgttaacgccaagaacacaatggagatcgg 342
>gb|CL508133.1|CL508133 SAIL_792_F05.v3 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_792_F05.v3, DNA sequence
Length = 1921
Score = 44.1 bits (22), Expect = 0.055
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 930 ctgctgccccggctccgtctggcccc 955
||||||||||| ||||||||||||||
Sbjct: 820 ctgctgccccgcctccgtctggcccc 795
>gb|BP843352.1|BP843352 BP843352 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-57-N11 5',
mRNA sequence
Length = 384
Score = 42.1 bits (21), Expect = 0.22
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 360 aacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccggc 419
|||||||| ||||||||| | ||||||||| || ||||||||||| || || || |||
Sbjct: 316 aacatgcttatcaagctcgttaacgccaagaacacaatggagatcggagtttagactggc 375
Query: 420 tactc 424
|||||
Sbjct: 376 tactc 380
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,465
Number of Sequences: 1013581
Number of extensions: 253465
Number of successful extensions: 18504
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18257
Number of HSP's gapped (non-prelim): 247
length of query: 1190
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1170
effective length of database: 888,669,252
effective search space: 1039743024840
effective search space used: 1039743024840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)