BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276392.2.1
(644 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV784434.1|AV784434 AV784434 RAFL5 Arabidopsis thaliana ... 167 3e-039
gb|AV787483.1|AV787483 AV787483 RAFL6 Arabidopsis thaliana ... 167 3e-039
gb|AV823465.1|AV823465 AV823465 RAFL5 Arabidopsis thaliana ... 167 3e-039
gb|BU635873.1|BU635873 005A09 Infected Arabidopsis Leaf Ara... 167 3e-039
gb|BP783102.1|BP783102 BP783102 RAFL7 Arabidopsis thaliana ... 167 3e-039
gb|BP818534.1|BP818534 BP818534 RAFL19 Arabidopsis thaliana... 167 3e-039
gb|AY045818.1| Arabidopsis thaliana putative 60S ribosomal ... 167 3e-039
gb|AY091359.1| Arabidopsis thaliana putative 60S ribosomal ... 167 3e-039
emb|BX825773.1|CNS0A6BE Arabidopsis thaliana Full-length cD... 167 3e-039
ref|NM_113811.3| Arabidopsis thaliana structural constituen... 167 3e-039
emb|BX825772.1|CNS0A6BD Arabidopsis thaliana Full-length cD... 153 4e-035
gb|BP587808.1|BP587808 BP587808 RAFL15 Arabidopsis thaliana... 151 2e-034
gb|BP828332.1|BP828332 BP828332 RAFL19 Arabidopsis thaliana... 151 2e-034
gb|BP652482.1|BP652482 BP652482 RAFL19 Arabidopsis thaliana... 147 3e-033
gb|BP585523.1|BP585523 BP585523 RAFL15 Arabidopsis thaliana... 143 4e-032
gb|BP591007.1|BP591007 BP591007 RAFL15 Arabidopsis thaliana... 141 2e-031
gb|BP627689.1|BP627689 BP627689 RAFL17 Arabidopsis thaliana... 135 1e-029
gb|BP589285.1|BP589285 BP589285 RAFL15 Arabidopsis thaliana... 133 4e-029
gb|BP799247.1|BP799247 BP799247 RAFL14 Arabidopsis thaliana... 133 4e-029
gb|BP638564.1|BP638564 BP638564 RAFL19 Arabidopsis thaliana... 131 2e-028
gb|BP852362.1|BP852362 BP852362 RAFL21 Arabidopsis thaliana... 125 1e-026
gb|BP845883.1|BP845883 BP845883 RAFL21 Arabidopsis thaliana... 119 6e-025
gb|BP634296.1|BP634296 BP634296 RAFL17 Arabidopsis thaliana... 115 1e-023
gb|BP579503.1|BP579503 BP579503 RAFL14 Arabidopsis thaliana... 109 6e-022
gb|BP654583.1|BP654583 BP654583 RAFL19 Arabidopsis thaliana... 107 2e-021
emb|AL951922.1| Arabidopsis thaliana T-DNA flanking sequenc... 105 9e-021
emb|AL951923.1| Arabidopsis thaliana T-DNA flanking sequenc... 105 9e-021
dbj|AP000386.1| Arabidopsis thaliana genomic DNA, chromosom... 105 9e-021
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 105 9e-021
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 105 9e-021
emb|BX825288.1|CNS0A6GY Arabidopsis thaliana Full-length cD... 100 6e-019
gb|BP586707.1|BP586707 BP586707 RAFL15 Arabidopsis thaliana... 94 4e-017
gb|BP629512.1|BP629512 BP629512 RAFL17 Arabidopsis thaliana... 94 4e-017
gb|BP669978.1|BP669978 BP669978 RAFL21 Arabidopsis thaliana... 90 6e-016
gb|BP592156.1|BP592156 BP592156 RAFL15 Arabidopsis thaliana... 88 2e-015
gb|AV533404.1|AV533404 AV533404 Arabidopsis thaliana flower... 78 2e-012
gb|BP652187.1|BP652187 BP652187 RAFL19 Arabidopsis thaliana... 78 2e-012
gb|BP866155.1|BP866155 BP866155 RAFL21 Arabidopsis thaliana... 62 1e-007
emb|CR399292.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 8e-006
gb|Z24538.1|Z24538 ATTS980 Ra147.1 Arabidopsis thaliana cDN... 56 8e-006
gb|F20073.1|F20073 ATTS6112 AC16H Arabidopsis thaliana cDNA... 56 8e-006
gb|T22624.1|T22624 4632 Lambda-PRL2 Arabidopsis thaliana cD... 56 8e-006
gb|H36824.1|H36824 14953 Lambda-PRL2 Arabidopsis thaliana c... 56 8e-006
gb|H76753.1|H76753 17184 Lambda-PRL2 Arabidopsis thaliana c... 56 8e-006
gb|CB264494.1|CB264494 58-E014994-035-003-C16-T7R MPIZ-ADIS... 56 8e-006
gb|BP803349.1|BP803349 BP803349 RAFL14 Arabidopsis thaliana... 56 8e-006
gb|BP818794.1|BP818794 BP818794 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|BP831491.1|BP831491 BP831491 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|BP833469.1|BP833469 BP833469 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|BP839116.1|BP839116 BP839116 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|BP863149.1|BP863149 BP863149 RAFL21 Arabidopsis thaliana... 56 8e-006
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 56 8e-006
gb|AY080712.1| Arabidopsis thaliana putative 60s ribosomal ... 56 8e-006
gb|AY117327.1| Arabidopsis thaliana putative 60S ribosomal ... 56 8e-006
emb|AX506058.1| Sequence 753 from Patent WO0216655 56 8e-006
gb|AY088495.1| Arabidopsis thaliana clone 7182 mRNA, comple... 56 8e-006
gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BA... 56 8e-006
emb|BX814692.1|CNS0ADOU Arabidopsis thaliana Full-length cD... 56 8e-006
ref|NM_102452.3| Arabidopsis thaliana structural constituen... 56 8e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 56 8e-006
gb|AI994094.1|AI994094 701498663 A. thaliana, Ohio State cl... 54 3e-005
gb|BE039060.1|BE039060 AB09B02 AB Arabidopsis thaliana cDNA... 54 3e-005
gb|AV787370.1|AV787370 AV787370 RAFL6 Arabidopsis thaliana ... 54 3e-005
gb|AV790447.1|AV790447 AV790447 RAFL6 Arabidopsis thaliana ... 54 3e-005
gb|AV526629.1|AV526629 AV526629 Arabidopsis thaliana aboveg... 54 3e-005
gb|AV532287.1|AV532287 AV532287 Arabidopsis thaliana flower... 54 3e-005
gb|AV533399.1|AV533399 AV533399 Arabidopsis thaliana flower... 54 3e-005
gb|AV534396.1|AV534396 AV534396 Arabidopsis thaliana flower... 54 3e-005
gb|AV565412.1|AV565412 AV565412 Arabidopsis thaliana green ... 54 3e-005
gb|BP561283.1|BP561283 BP561283 RAFL6 Arabidopsis thaliana ... 54 3e-005
gb|BP582226.1|BP582226 BP582226 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|BP583743.1|BP583743 BP583743 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|BP595995.1|BP595995 BP595995 RAFL15 Arabidopsis thaliana... 54 3e-005
gb|BP633791.1|BP633791 BP633791 RAFL17 Arabidopsis thaliana... 54 3e-005
gb|BP654753.1|BP654753 BP654753 RAFL19 Arabidopsis thaliana... 54 3e-005
gb|BP785734.1|BP785734 BP785734 RAFL7 Arabidopsis thaliana ... 54 3e-005
gb|BP792167.1|BP792167 BP792167 RAFL7 Arabidopsis thaliana ... 54 3e-005
gb|BP799612.1|BP799612 BP799612 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|BP842426.1|BP842426 BP842426 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP861363.1|BP861363 BP861363 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP866747.1|BP866747 BP866747 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP868072.1|BP868072 BP868072 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|AF324703.1|AF324703 Arabidopsis thaliana T6C23.18 mRNA, ... 54 3e-005
gb|AY052720.1| Arabidopsis thaliana F24J1.23/F24J1.23 mRNA,... 54 3e-005
gb|AF446885.1|AF446885 Arabidopsis thaliana F24J1.23/F24J1.... 54 3e-005
gb|AF327531.1| Arabidopsis thaliana putative 60S ribosomal ... 54 3e-005
gb|AF349526.1| Arabidopsis thaliana putative 60S ribosomal ... 54 3e-005
gb|AY085544.1| Arabidopsis thaliana clone 1568 mRNA, comple... 54 3e-005
emb|BX818608.1|CNS0AAXR Arabidopsis thaliana Full-length cD... 54 3e-005
emb|BX814797.1|CNS0AC1Q Arabidopsis thaliana Full-length cD... 54 3e-005
emb|BX816733.1|CNS0ABV7 Arabidopsis thaliana Full-length cD... 54 3e-005
ref|NM_105630.2| Arabidopsis thaliana RPL34 (RIBOSOMAL PROT... 54 3e-005
gb|AV814513.1|AV814513 AV814513 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|BP579863.1|BP579863 BP579863 RAFL14 Arabidopsis thaliana... 50 5e-004
gb|BP632205.1|BP632205 BP632205 RAFL17 Arabidopsis thaliana... 50 5e-004
gb|BP785267.1|BP785267 BP785267 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|BP837681.1|BP837681 BP837681 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|BP846462.1|BP846462 BP846462 RAFL21 Arabidopsis thaliana... 50 5e-004
gb|BP846570.1|BP846570 BP846570 RAFL21 Arabidopsis thaliana... 50 5e-004
gb|AI995012.1|AI995012 701501452 A. thaliana, Ohio State cl... 48 0.002
gb|CB262293.1|CB262293 66-E8879-008-014-C18-pBl2 MPIZ-ADIS-... 48 0.002
gb|BP623704.1|BP623704 BP623704 RAFL17 Arabidopsis thaliana... 48 0.002
gb|BP628289.1|BP628289 BP628289 RAFL17 Arabidopsis thaliana... 48 0.002
gb|BP635911.1|BP635911 BP635911 RAFL18 Arabidopsis thaliana... 48 0.002
gb|BP798116.1|BP798116 BP798116 RAFL14 Arabidopsis thaliana... 48 0.002
gb|BP834071.1|BP834071 BP834071 RAFL19 Arabidopsis thaliana... 48 0.002
gb|BP854821.1|BP854821 BP854821 RAFL21 Arabidopsis thaliana... 48 0.002
gb|BP856539.1|BP856539 BP856539 RAFL21 Arabidopsis thaliana... 48 0.002
gb|BP867672.1|BP867672 BP867672 RAFL21 Arabidopsis thaliana... 48 0.002
gb|CB259748.1|CB259748 25-E9623-013-004-A08-T7R MPIZ-ADIS-0... 46 0.007
gb|BP581235.1|BP581235 BP581235 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP582492.1|BP582492 BP582492 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP595507.1|BP595507 BP595507 RAFL15 Arabidopsis thaliana... 46 0.007
gb|BP650069.1|BP650069 BP650069 RAFL19 Arabidopsis thaliana... 46 0.007
gb|BP671872.1|BP671872 BP671872 RAFL21 Arabidopsis thaliana... 46 0.007
gb|BP797192.1|BP797192 BP797192 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP802341.1|BP802341 BP802341 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP816280.1|BP816280 BP816280 RAFL19 Arabidopsis thaliana... 46 0.007
gb|BP830683.1|BP830683 BP830683 RAFL19 Arabidopsis thaliana... 46 0.007
gb|BP834364.1|BP834364 BP834364 RAFL19 Arabidopsis thaliana... 46 0.007
gb|BP837350.1|BP837350 BP837350 RAFL19 Arabidopsis thaliana... 46 0.007
gb|BP843089.1|BP843089 BP843089 RAFL21 Arabidopsis thaliana... 46 0.007
emb|BX814361.1|CNS0AEHP Arabidopsis thaliana Full-length cD... 46 0.007
gb|BP827642.1|BP827642 BP827642 RAFL19 Arabidopsis thaliana... 44 0.029
gb|BP839688.1|BP839688 BP839688 RAFL19 Arabidopsis thaliana... 44 0.029
gb|AV520372.1|AV520372 AV520372 Arabidopsis thaliana aboveg... 42 0.12
gb|BP631365.1|BP631365 BP631365 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP644041.1|BP644041 BP644041 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP777191.1|BP777191 BP777191 RAFL7 Arabidopsis thaliana ... 42 0.12
gb|BP823536.1|BP823536 BP823536 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP593887.1|BP593887 BP593887 RAFL15 Arabidopsis thaliana... 40 0.46
gb|BP655895.1|BP655895 BP655895 RAFL19 Arabidopsis thaliana... 40 0.46
gb|BP823392.1|BP823392 BP823392 RAFL19 Arabidopsis thaliana... 40 0.46
gb|BP855415.1|BP855415 BP855415 RAFL21 Arabidopsis thaliana... 40 0.46
gb|BP862661.1|BP862661 BP862661 RAFL21 Arabidopsis thaliana... 40 0.46
dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.46
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.46
gb|DQ132734.1| Arabidopsis thaliana clone 02453 hypothetica... 40 0.46
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.46
>gb|AV784434.1|AV784434 AV784434 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-19-H05 3',
mRNA sequence
Length = 553
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 398 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 339
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 338 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 279
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 278 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 219
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 218 aagattgtgaagaaggttttgaag 195
>gb|AV787483.1|AV787483 AV787483 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-75-M21 3',
mRNA sequence
Length = 419
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 379 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 320
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 319 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 260
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 259 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 200
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 199 aagattgtgaagaaggttttgaag 176
>gb|AV823465.1|AV823465 AV823465 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-19-H05 5',
mRNA sequence
Length = 592
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 158 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 217
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 218 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 277
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 278 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 337
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 338 aagattgtgaagaaggttttgaag 361
>gb|BU635873.1|BU635873 005A09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 516
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 95 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 154
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 155 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 214
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 215 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 274
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 275 aagattgtgaagaaggttttgaag 298
>gb|BP783102.1|BP783102 BP783102 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-84-M13 3',
mRNA sequence
Length = 421
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 420 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 361
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 360 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 301
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 300 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 241
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 240 aagattgtgaagaaggttttgaag 217
>gb|BP818534.1|BP818534 BP818534 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-48-G24 5',
mRNA sequence
Length = 388
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 154 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 213
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 214 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 273
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 274 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 333
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 334 aagattgtgaagaaggttttgaag 357
>gb|AY045818.1| Arabidopsis thaliana putative 60S ribosomal protein L34 (At3g28900)
mRNA, complete cds
Length = 568
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 155 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 214
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 215 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 274
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 275 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 334
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 335 aagattgtgaagaaggttttgaag 358
>gb|AY091359.1| Arabidopsis thaliana putative 60S ribosomal protein L34 (At3g28900)
mRNA, complete cds
Length = 394
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 121 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 180
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 181 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 240
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 241 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 300
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 301 aagattgtgaagaaggttttgaag 324
>emb|BX825773.1|CNS0A6BE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL61ZF04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 547
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 128 ggacctaagtgccctgtaactggcaagagaatccaagggattccgcatttgagacctgct 187
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 188 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 247
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 248 gttctttctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 307
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 308 aagattgtgaagaaggttttgaag 331
>ref|NM_113811.3| Arabidopsis thaliana structural constituent of ribosome AT3G28900
mRNA, complete cds
Length = 574
Score = 167 bits (84), Expect = 3e-039
Identities = 174/204 (85%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 155 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 214
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 215 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 274
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 275 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 334
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 335 aagattgtgaagaaggttttgaag 358
>emb|BX825772.1|CNS0A6BD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL61ZF03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 544
Score = 153 bits (77), Expect = 4e-035
Identities = 179/213 (84%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || ||||| |||||||| ||||| || |||| ||||||
Sbjct: 128 ggacctaagtgccctgttactggcaagaaaatccaagggattccgcatttgagtcctgct 187
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| || |||||| ||||||| |||
Sbjct: 188 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtaaatcgtgcatatggtggt 247
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 248 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 307
Query: 362 aagatagtgaagaaggtgttgaagatccaaaag 394
||||| || |||||||| |||||| | ||||||
Sbjct: 308 aagattgtaaagaaggttttgaagcttcaaaag 340
>gb|BP587808.1|BP587808 BP587808 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-P18 3',
mRNA sequence
Length = 414
Score = 151 bits (76), Expect = 2e-034
Identities = 172/204 (84%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||| ||| ||||| || |||||||||||
Sbjct: 379 ggacctaagtgccctgttactggcaagagaatccgagggattccccatttgagacctgct 320
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 319 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 260
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
|||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 259 tttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 200
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 199 aagattgtgaagaaggttttgaag 176
>gb|BP828332.1|BP828332 BP828332 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-78-H23 5',
mRNA sequence
Length = 377
Score = 151 bits (76), Expect = 2e-034
Identities = 173/204 (84%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || |||||||||||
Sbjct: 153 ggacctaagtgccctgttactggcaagagaatccaagggattccgcatttgagacctgct 212
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
||||| || ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 213 gagtaaaa-aggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 271
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 272 gttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaacag 331
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||||| ||||||
Sbjct: 332 aagattgtgaagaaggttttgaag 355
>gb|BP652482.1|BP652482 BP652482 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-93-E15 3',
mRNA sequence
Length = 383
Score = 147 bits (74), Expect = 3e-033
Identities = 149/174 (85%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtccaggttggcaaggaac 271
|||||||| ||||| || ||||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 349 atccaagggattccgcatttgagacctgctgagtacaaaaggtcaaggttgccaaggaac 290
Query: 272 caaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagttagggagagg 331
| ||||| ||||||| | ||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 289 gagaggacagtgaatcctgcatatggtggtgttctatctggaattgctgttagggagagg 230
Query: 332 atcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||| || | |||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 229 atcgtcaggcccttcttggttgaagaacagaagattgtgaagaaggttttgaag 176
>gb|BP585523.1|BP585523 BP585523 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-02-N15 3',
mRNA sequence
Length = 437
Score = 143 bits (72), Expect = 4e-032
Identities = 171/204 (83%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||| ||| ||||| || |||||||||||
Sbjct: 379 ggacctaagtgccctgttactggcaagagaatccgagggattccgcatttgagacctgct 320
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggt 301
|||||||| ||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||
Sbjct: 319 gagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggt 260
Query: 302 gttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacag 361
||||| ||||| ||| |||||||||||||| || | ||||| |||||||| ||||||
Sbjct: 259 gttctatctggagttgctcttagggagaggatcgtcagggccttcttggttgaagaacag 200
Query: 362 aagatagtgaagaaggtgttgaag 385
||||| ||||||||| | ||||||
Sbjct: 199 aagattgtgaagaagcttttgaag 176
>gb|BP591007.1|BP591007 BP591007 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-P17 3',
mRNA sequence
Length = 422
Score = 141 bits (71), Expect = 2e-031
Identities = 134/155 (86%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||| | ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 412 tgagacctgctgagtaccaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 353
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| |||||||| ||||| ||| ||||||||||||||| || | ||||| ||||
Sbjct: 352 catatggtggtgttctatctggagttgctgttagggagaggatcgtcagggccttcttgg 293
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| |||||||||| ||||||
Sbjct: 292 ttgaagaacagaagattttgaagaaggttttgaag 258
>gb|BP627689.1|BP627689 BP627689 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-09-I11 3',
mRNA sequence
Length = 341
Score = 135 bits (68), Expect = 1e-029
Identities = 129/148 (87%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 238 tgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatgg 297
|||||||||||| ||||| ||||||||||||||| | ||||| ||||||||| |||||||
Sbjct: 341 tgctgagtacaaaaggtc-aggttggcaaggaacgagaggacagtgaatcgtgcatatgg 283
Query: 298 cggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgagga 357
|||||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| ||
Sbjct: 282 tggtgttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaaga 223
Query: 358 acagaagatagtgaagaaggtgttgaag 385
||||||||| ||||||||||| ||||||
Sbjct: 222 acagaagattgtgaagaaggttttgaag 195
>gb|BP589285.1|BP589285 BP589285 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-49-E15 3',
mRNA sequence
Length = 438
Score = 133 bits (67), Expect = 4e-029
Identities = 133/155 (85%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 411 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 352
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| ||| |||| ||||| ||| ||||||||||||||| || | ||||| |||
Sbjct: 351 catatggtggttttctatctggagttgctgttagggagaggatcgtcagggccttcttgt 292
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| |||||||||| ||||||
Sbjct: 291 ttgaagaacagaagattttgaagaaggttttgaag 257
>gb|BP799247.1|BP799247 BP799247 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-10-E20 5',
mRNA sequence
Length = 410
Score = 133 bits (67), Expect = 4e-029
Identities = 134/155 (86%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | |||| |||||||||
Sbjct: 199 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggaaagtgaatcgtg 258
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| |||| ||| ||||| ||| ||||||||||||||| || | ||||| ||||
Sbjct: 259 catatggtggtg-tctatctggagttgctgttagggagaggatcgtcagggccttcttgg 317
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| ||||||||||| ||||||
Sbjct: 318 ttgaagaacagaagattgtgaagaaggttttgaag 352
>gb|BP638564.1|BP638564 BP638564 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-10-B22 3',
mRNA sequence
Length = 388
Score = 131 bits (66), Expect = 2e-028
Identities = 147/174 (84%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtccaggttggcaaggaac 271
|||||||| ||||| || | ||||||||||||||| | ||||| |||||||||||||||
Sbjct: 349 atccaagggattccccattttagacctgctgagtaccaaaggtcaaggttggcaaggaac 290
Query: 272 caaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagttagggagagg 331
| ||||| ||||||| | ||||||| |||||||| ||||| ||| |||||||||||
Sbjct: 289 gagaggacagtgaatcctgcatatggtggtgttctatctggagttgcttttagggagagg 230
Query: 332 atcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||| || | ||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 229 atcgtcagggccttcttggttgaagaacagaagattgtgaagaaggttttgaag 176
>gb|BP852362.1|BP852362 BP852362 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-19-K02 5',
mRNA sequence
Length = 372
Score = 125 bits (63), Expect = 1e-026
Identities = 133/155 (85%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||| ||||||| | ||||| |||| ||||
Sbjct: 203 tgagacctgctgagtacaaaaggtcaaggttggaaaggaacgagaggacagtgactcgtg 262
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| ||||| || ||||| ||| ||||||||||||||| || | ||||| ||||
Sbjct: 263 catatggtggtgt-ctatctggagttgctgttagggagaggatcgtcagggccttcttgg 321
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| ||||||||||| ||||||
Sbjct: 322 ttgaagaacagaagatggtgaagaaggttttgaag 356
>gb|BP845883.1|BP845883 BP845883 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-95-B17 5',
mRNA sequence
Length = 403
Score = 119 bits (60), Expect = 6e-025
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| |||| |||||||| | | ||||| | |||||||
Sbjct: 202 tgagacctgctgagtacaaaaggtcaaggtgggcaaggaccgagaggacagcgaatcgtg 261
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| |||||| | ||||| || ||||||||||||||| |||| ||||| ||||
Sbjct: 262 catatggtggtgttttatctggagtcgctgttagggagaggatcgtccgggccttcttgg 321
Query: 351 ttgaggaacagaagatagtgaagaaggt 378
|||| ||||||||||| |||||||||||
Sbjct: 322 ttgacgaacagaagatggtgaagaaggt 349
>gb|BP634296.1|BP634296 BP634296 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-33-O10 3',
mRNA sequence
Length = 429
Score = 115 bits (58), Expect = 1e-023
Identities = 147/174 (84%), Gaps = 2/174 (1%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtccaggttggcaaggaac 271
|||||||| ||||| || ||||||||||||||||||| ||||| ||||||||||||| |
Sbjct: 348 atccaagggattccgcatttgagacctgctgagtacaaaaggtc-aggttggcaagga-c 291
Query: 272 caaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagttagggagagg 331
| ||||| ||||||| ||||||||| ||| |||| ||| | ||| |||||||||||
Sbjct: 290 gagaggacagtgaatcctccatatggtggttttctatcttgagttgcttttagggagagg 231
Query: 332 atcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||| || | ||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 230 atcgtcagggccttcttggttgaagaacagaagattgtgaagaaggttttgaag 177
>gb|BP579503.1|BP579503 BP579503 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-22-O16 3',
mRNA sequence
Length = 438
Score = 109 bits (55), Expect = 6e-022
Identities = 132/155 (85%), Gaps = 2/155 (1%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| || || |||||| |||||||| | ||||| |||||||||
Sbjct: 369 tgagacctgctgagtacaaaag-tcaaggttg-caaggaacgagaggacagtgaatcgtt 312
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| | |||||| ||||| ||| |||||||||||||| || | ||||| ||||
Sbjct: 311 catatggtgttgttctatctggagttgcttttagggagaggatcgtcagggccttcttgg 252
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| ||||||||||| ||||||
Sbjct: 251 ttgaagaacagaagattgtgaagaaggttttgaag 217
>gb|BP654583.1|BP654583 BP654583 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-18-D04 3',
mRNA sequence
Length = 356
Score = 107 bits (54), Expect = 2e-021
Identities = 128/150 (85%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggtt-ggcaaggaaccaaaggactgtgaatcgt 289
||||||||||||||||||| ||||| ||||| |||||||||| | ||||| ||||||||
Sbjct: 345 tgagacctgctgagtacaaaaggtcaaggttgggcaaggaacgagaggacattgaatcgt 286
Query: 290 ccatatggcggtgttctgtctgg-tactgcagttagggagaggatcatccgcgccttttt 348
||||||| |||||||| ||||| ||| |||||| |||||||| || | ||||| ||
Sbjct: 285 gcatatggtggtgttctatctggaggttgctgttaggtagaggatcgtcagggccttctt 226
Query: 349 ggttgaggaacagaagatagtgaagaaggt 378
|||||| ||||||||||| |||||||||||
Sbjct: 225 ggttgaagaacagaagattgtgaagaaggt 196
>emb|AL951922.1| Arabidopsis thaliana T-DNA flanking sequence GK-339F04-016138,
genomic survey sequence
Length = 550
Score = 105 bits (53), Expect = 9e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 369 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 310
Query: 291 catatggcggtgttctgtctggtactgcagttagggagagg 331
||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 309 catatggtggtgttctatctggagttgctgttagggagagg 269
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 341 gcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 180 gccttcttggttgaagaacagaagattgtgaagaaggttttgaag 136
>emb|AL951923.1| Arabidopsis thaliana T-DNA flanking sequence GK-339F04-016160,
genomic survey sequence
Length = 555
Score = 105 bits (53), Expect = 9e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 370 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 311
Query: 291 catatggcggtgttctgtctggtactgcagttagggagagg 331
||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 310 catatggtggtgttctatctggagttgctgttagggagagg 270
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 341 gcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 181 gccttcttggttgaagaacagaagattgtgaagaaggttttgaag 137
>dbj|AP000386.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MLD15
Length = 82430
Score = 105 bits (53), Expect = 9e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 49422 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 49363
Query: 291 catatggcggtgttctgtctggtactgcagttagggagagg 331
||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 49362 catatggtggtgttctatctggagttgctgttagggagagg 49322
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 341 gcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 49233 gccttcttggttgaagaacagaagattgtgaagaaggttttgaag 49189
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 105 bits (53), Expect = 9e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 10827040 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 10826981
Query: 291 catatggcggtgttctgtctggtactgcagttagggagagg 331
||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 10826980 catatggtggtgttctatctggagttgctgttagggagagg 10826940
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 341 gcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 10826851 gccttcttggttgaagaacagaagattgtgaagaaggttttgaag 10826807
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 105 bits (53), Expect = 9e-021
Identities = 89/101 (88%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 10904373 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgagaggacagtgaatcgtg 10904314
Query: 291 catatggcggtgttctgtctggtactgcagttagggagagg 331
||||||| |||||||| ||||| ||| ||||||||||||
Sbjct: 10904313 catatggtggtgttctatctggagttgctgttagggagagg 10904273
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 341 gcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 10904184 gccttcttggttgaagaacagaagattgtgaagaaggttttgaag 10904140
>emb|BX825288.1|CNS0A6GY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL27ZA02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 565
Score = 99.6 bits (50), Expect = 6e-019
Identities = 161/198 (81%)
Strand = Plus / Plus
Query: 188 aagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgctgagtac 247
|||||||| || || || ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct: 151 aagtgccctgttactggcaagaaaattcaagggattccgcatttgagagctgctgagtac 210
Query: 248 aagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctg 307
|| ||||| ||||||| ||||||| | ||||| ||||||||| ||||| | ||||| ||
Sbjct: 211 aaaaggtcaaggttgggaaggaacgagaggacagtgaatcgtgcatattgtggtgtccta 270
Query: 308 tctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacagaagata 367
||||| || ||||||||||||||| | | ||||| |||||||| ||||||||||
Sbjct: 271 tctggagtagctgttagggagaggatcgtaagggccttcttggttgaagaacagaagact 330
Query: 368 gtgaagaaggtgttgaag 385
|| |||||||| ||||||
Sbjct: 331 gttaagaaggttttgaag 348
>gb|BP586707.1|BP586707 BP586707 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-07-F01 3',
mRNA sequence
Length = 440
Score = 93.7 bits (47), Expect = 4e-017
Identities = 113/135 (83%)
Strand = Plus / Minus
Query: 251 aggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtct 310
||||| ||||||||||||||||||||||| |||||||| ||||| | ||| |||| |||
Sbjct: 327 aggtcaaggttggcaaggaaccaaaggacaatgaatcgtgcatattgtggttttctatct 268
Query: 311 ggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacagaagatagtg 370
|| | ||| ||||||| |||||| || | ||||| |||||| | ||||||||||| |||
Sbjct: 267 ggaattgcttttagggaaaggatcctcagggccttcttggtttaagaacagaagattgtg 208
Query: 371 aagaaggtgttgaag 385
|| ||||| ||||||
Sbjct: 207 aaaaaggttttgaag 193
>gb|BP629512.1|BP629512 BP629512 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-16-H12 3',
mRNA sequence
Length = 353
Score = 93.7 bits (47), Expect = 4e-017
Identities = 113/135 (83%)
Strand = Plus / Minus
Query: 251 aggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtct 310
||||| ||||||||||||||| | ||||| ||||||||| ||||||| |||||||| |||
Sbjct: 350 aggtcaaggttggcaaggaacgagaggacagtgaatcgtgcatatggtggtgttctatct 291
Query: 311 ggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacagaagatagtg 370
|| | | |||||||||||||| || | ||||| |||||||| ||||| ||||| |||
Sbjct: 290 ggagtttcttttagggagaggatcctcagggccttcttggttgaagaacacaagattgtg 231
Query: 371 aagaaggtgttgaag 385
|||||| | ||||||
Sbjct: 230 aagaagcttttgaag 216
>gb|BP669978.1|BP669978 BP669978 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-33-F19 3',
mRNA sequence
Length = 432
Score = 89.7 bits (45), Expect = 6e-016
Identities = 167/205 (81%), Gaps = 2/205 (0%)
Strand = Plus / Minus
Query: 182 ggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgct 241
||||| |||||||| || || || |||| |||||||| ||||| || ||| |||||||
Sbjct: 376 ggacctaagtgccctgttactggcaagagaatccaagggattccccatttgatacctgct 317
Query: 242 gagtacaagaggtccaggttggcaaggaaccaaagg-actgtgaatcgtccatatggcgg 300
|||||||| ||||| |||||| |||| ||| | ||| || ||||||||||||||||| |
Sbjct: 316 gagtacaaaaggtcaaggttgccaag-aacgagagggacagtgaatcgtccatatggtgt 258
Query: 301 tgttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaaca 360
| |||| ||||| ||| |||||||||||||| || | |||| |||||||| |||||
Sbjct: 257 ttttctatctggagttgctcttagggagaggatcgtcaggcccttcttggttgaagaaca 198
Query: 361 gaagatagtgaagaaggtgttgaag 385
|||||| |||||||||| ||||||
Sbjct: 197 gaagattttgaagaaggttttgaag 173
>gb|BP592156.1|BP592156 BP592156 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-17-E20 3',
mRNA sequence
Length = 411
Score = 87.7 bits (44), Expect = 2e-015
Identities = 135/164 (82%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 232 gagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtcc 291
|||||||||||||||| | ||||| |||||||||| |||||| ||||| ||||||| | |
Sbjct: 411 gagacctgctgagtaccaaaggtcaaggttggcaaagaaccagaggacagtgaatcctgc 352
Query: 292 atatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctt-tttgg 350
|||||| ||| |||| ||||| ||| ||||||| |||||| || | ||||| || ||
Sbjct: 351 atatggtggttttctatctggagttgcttttagggaaaggatcctcagggccttcttggg 292
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaagatccaaaag 394
|||| ||||||||||| ||||| ||| | |||||| | ||||||
Sbjct: 291 ttgaagaacagaagattgtgaaaaagtttttgaagcttcaaaag 248
>gb|AV533404.1|AV533404 AV533404 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB061a08F 3', mRNA sequence
Length = 304
Score = 77.8 bits (39), Expect = 2e-012
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 299 ggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaa 358
|||||||| ||||| ||| ||||||||||||||| || | ||||| |||||||| |||
Sbjct: 301 ggtgttctatctggagttgctgttagggagaggatcgtcagggccttcttggttgaagaa 242
Query: 359 cagaagatagtgaagaaggtgttgaag 385
|||||||| ||||||||||| ||||||
Sbjct: 241 cagaagattgtgaagaaggttttgaag 215
>gb|BP652187.1|BP652187 BP652187 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-92-A17 3',
mRNA sequence
Length = 385
Score = 77.8 bits (39), Expect = 2e-012
Identities = 130/155 (83%), Gaps = 4/155 (2%)
Strand = Plus / Minus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
||||||||||||||||||| ||||| ||||||||||||||| | | ||| ||| |||||
Sbjct: 331 tgagacctgctgagtacaaaaggtcaaggttggcaaggaacgaga-gacagtg-atcgtg 274
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
||||||| | | |||| ||||| | ||| |||| |||||||||| || ||||| ||||
Sbjct: 273 catatggtgtttttctatctgg-agtgctgtta-ggagaggatcgtcatggccttcttgg 216
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaag 385
|||| ||||||||||| ||||| ||||| ||||||
Sbjct: 215 ttgaagaacagaagattgtgaacaaggttttgaag 181
>gb|BP866155.1|BP866155 BP866155 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-76-L10 5',
mRNA sequence
Length = 386
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 275 aggactgtgaatcgtccatatggcggtgttctgtctggtactgcagttagggagaggatc 334
||||| ||||| ||| | ||||| || |||||||||||| |||| |||||||| || |||
Sbjct: 275 aggaccgtgaaccgtgcttatggtggggttctgtctggttctgctgttagggaaagaatc 334
Query: 335 atccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttgaag 385
|| || ||||| | || ||||| || ||||| ||||||||||| ||||||
Sbjct: 335 attcgtgccttccttgtggaggagcaaaagattgtgaagaaggttttgaag 385
>emb|CR399292.1| Arabidopsis thaliana T-DNA flanking sequence GK-816F05-025638,
genomic survey sequence
Length = 313
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 142 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 99
>gb|Z24538.1|Z24538 ATTS980 Ra147.1 Arabidopsis thaliana cDNA clone RaR125 5', mRNA
sequence
Length = 314
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 37 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 80
>gb|F20073.1|F20073 ATTS6112 AC16H Arabidopsis thaliana cDNA clone TAP0238 similar to
ribosomal protein L34, mRNA sequence
Length = 554
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 36 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 79
>gb|T22624.1|T22624 4632 Lambda-PRL2 Arabidopsis thaliana cDNA clone 105E2T7, mRNA
sequence
Length = 476
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 33 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 76
>gb|H36824.1|H36824 14953 Lambda-PRL2 Arabidopsis thaliana cDNA clone 179H12T7, mRNA
sequence
Length = 543
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 41 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 84
>gb|H76753.1|H76753 17184 Lambda-PRL2 Arabidopsis thaliana cDNA clone 202D21T7, mRNA
sequence
Length = 436
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 35 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 78
>gb|CB264494.1|CB264494 58-E014994-035-003-C16-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000C163Q 5-PRIME, mRNA sequence
Length = 608
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 24 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 67
>gb|BP803349.1|BP803349 BP803349 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-28-N21 5',
mRNA sequence
Length = 379
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 45 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 88
>gb|BP818794.1|BP818794 BP818794 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-49-D16 5',
mRNA sequence
Length = 401
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 51 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 94
>gb|BP831491.1|BP831491 BP831491 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-89-C19 5',
mRNA sequence
Length = 398
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 45 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 88
>gb|BP833469.1|BP833469 BP833469 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-96-F15 5',
mRNA sequence
Length = 385
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 77 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 120
>gb|BP839116.1|BP839116 BP839116 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-26-B02 5',
mRNA sequence
Length = 382
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 92 cacagctacgccaccaaatcgaaccagacccgcgtcgtcaagac 135
||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 78 cacagctacgccaccaaatcgaaccagcaccgtatcgtcaagac 121
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 308,455
Number of Sequences: 1013581
Number of extensions: 308455
Number of successful extensions: 24460
Number of sequences better than 0.5: 139
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 23539
Number of HSP's gapped (non-prelim): 922
length of query: 644
length of database: 908,940,872
effective HSP length: 20
effective length of query: 624
effective length of database: 888,669,252
effective search space: 554529613248
effective search space used: 554529613248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)