BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|O24183|O24183 Replication protein A1. 652 0.0
sptrnew|BAC77529|BAC77529 Replication protein A 70b. 650 0.0
sptr|Q9SD82|Q9SD82 Replication factor A-like protein. 506 e-142
sptr|Q9FME0|Q9FME0 Replication protein A1 (Putative RNA helicase). 498 e-139
sptr|Q9SKI4|Q9SKI4 Putative replication protein A1 (At2g06510). 214 4e-54
sptr|Q9FHJ6|Q9FHJ6 Replication protein A1-like. 202 1e-50
sw|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding su... 199 1e-49
sw|P22336|RFA1_YEAST Replication factor-A protein 1 (RF-A) (Sing... 199 1e-49
sptr|Q9AVL8|Q9AVL8 Replication protein A 70kDa. 196 6e-49
sptrnew|EAA32097|EAA32097 Hypothetical protein. 196 8e-49
sptr|Q8X0J1|Q8X0J1 Probable single-stranded DNA-binding protein ... 196 8e-49
sptr|Q8VEE4|Q8VEE4 Similar to replication protein A1 (70 kDa). 194 3e-48
sw|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding su... 192 1e-47
sw|Q92372|RFA1_SCHPO Replication factor-A protein 1 (Single-stra... 191 2e-47
sptr|O49671|O49671 Replication A protein-like. 187 3e-46
sptrnew|AAL39476|AAL39476 LD04815p. 173 7e-42
sw|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding su... 173 7e-42
sptr|Q8SR55|Q8SR55 DNA replication factor A protein 1. 168 2e-40
sptrnew|EAA01767|EAA01767 AgCP12781 (Fragment). 165 2e-39
sw|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit (RP-A) ... 157 5e-37
sptr|Q962V7|Q962V7 Replication protein A subunit 1. 153 6e-36
sw|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subuni... 142 2e-32
sptrnew|EAA15908|EAA15908 Putative replication A protein. 137 6e-31
sptr|Q9U0J0|Q9U0J0 Putative replication A protein. 133 8e-30
sptr|O97472|O97472 F18A1.5 protein. 129 2e-28
sptrnew|AAP92635|AAP92635 Cb1-727. 121 3e-26
sptr|Q9Y1I9|Q9Y1I9 Replication protein A large subunit. 120 6e-26
sptrnew|EAA17060|EAA17060 Replication protein A large subunit, p... 82 3e-14
sptr|Q803R4|Q803R4 Hypothetical protein. 79 2e-13
sptr|Q94DN4|Q94DN4 P0483G10.9 protein (P0401G10.31 protein). 77 9e-13
>sptr|O24183|O24183 Replication protein A1.
Length = 630
Score = 652 bits (1682), Expect = 0.0
Identities = 312/376 (82%), Positives = 351/376 (93%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ +SKGSLR+ANKQFKTV NDYE++LNENA+VEEAEGETF+P +QYN VKIDQLGPY
Sbjct: 255 GKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQLGPY 314
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQ 1232
VGGRELVD++GVVQSVSPTLSVRRKIDNETIPKRDIVVADDS KTVTISLWNDLATTTGQ
Sbjct: 315 VGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQ 374
Query: 1231 ELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSL 1052
ELLDMVDS+P++AIKSLKVSDFQG+SLST+GRST+ +NPDLPEA+ L++WYDSEGK TS+
Sbjct: 375 ELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSM 434
Query: 1051 APISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYR 872
A I +++GA+R GG +SMYSDRVFLSHITSDP +GQ+KPVFFSL A IS IKPDQ MWYR
Sbjct: 435 ASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYR 494
Query: 871 ACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
AC TCNKKVTEA GSGYWCEGCQKND+ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+G
Sbjct: 495 ACKTCNKKVTEAMGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVG 554
Query: 691 CSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFA 512
CSADELDRIRKEEGDDSY+LKLKEATWVPHLFRVSVTQ+EYMNEKRQRITVR EAPVD A
Sbjct: 555 CSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHA 614
Query: 511 AESKYLLEEIAKLTAC 464
AE+KY+LEEIAKLT C
Sbjct: 615 AEAKYMLEEIAKLTGC 630
>sptrnew|BAC77529|BAC77529 Replication protein A 70b.
Length = 630
Score = 650 bits (1676), Expect = 0.0
Identities = 311/376 (82%), Positives = 351/376 (93%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ +SKGSLR+A+KQFKTV NDYE++LNENA+VEEAEGETF+P +QYN VKIDQLGPY
Sbjct: 255 GKVYYISKGSLRVADKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQLGPY 314
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQ 1232
VGGRELVD++GVVQSVSPTLSVRRKIDNETIPKRDIVVADDS KTVTISLWNDLATTTGQ
Sbjct: 315 VGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQ 374
Query: 1231 ELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSL 1052
ELLDMVDS+P++AIKSLKVSDFQG+SLST+GRST+ +NPDLPEA+ L++WYDSEGK TS+
Sbjct: 375 ELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVLNPDLPEAEQLRAWYDSEGKGTSM 434
Query: 1051 APISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYR 872
A I +++GA+R GG +SMYSDRVFLSHITSDP +GQ+KPVFFSL A IS IKPDQ MWYR
Sbjct: 435 ASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYR 494
Query: 871 ACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
AC TCNKKVTEA GSGYWCEGCQKND+ECSLRYIMVIK+SDPTGEAW+S+FN+ AE+I+G
Sbjct: 495 ACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVG 554
Query: 691 CSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFA 512
CSADELDRIRKEEGDDSY+LKLKEATWVPHLFRVSVTQ+EYMNEKRQRITVR EAPVD A
Sbjct: 555 CSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHA 614
Query: 511 AESKYLLEEIAKLTAC 464
AE+KY+LEEIAKLT C
Sbjct: 615 AEAKYMLEEIAKLTGC 630
>sptr|Q9SD82|Q9SD82 Replication factor A-like protein.
Length = 604
Score = 506 bits (1302), Expect = e-142
Identities = 243/374 (64%), Positives = 305/374 (81%), Gaps = 2/374 (0%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGET-FLPPVQYNLVKIDQLGP 1415
G+ +S+GSL++ANKQFKTV+NDYE++LNEN+ VEEA E F P ++N V ID+LG
Sbjct: 226 GKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGT 285
Query: 1414 YVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTG 1235
YV ++L+D++GVVQSVSPT+S+RRK DNE IPKRDI +AD++ KTV +SLWNDLAT G
Sbjct: 286 YVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIG 345
Query: 1234 QELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTS 1055
QELLDM D+ PV+AIKSLKV FQGVSLSTI RS + INP+ PEA LKSWYD+EGK+TS
Sbjct: 346 QELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEGKETS 405
Query: 1054 LAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWY 875
++ I + + ++ G +SMYSDRVFLSHITS+P++G+EKPVFFS A IS IKPDQ MWY
Sbjct: 406 MSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKPDQTMWY 465
Query: 874 RACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKII 695
RAC TCNKKVTEA SGYWCE CQK D ECSLRYIM +K+SD TGE W+S FN+ AEKII
Sbjct: 466 RACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEAEKII 525
Query: 694 GCSADELDRIRKEEGD-DSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVD 518
GC+AD+L+ ++ EEG+ + + KLKEATW HLFR+SV+Q EY +EKRQRITVRG +P+D
Sbjct: 526 GCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGVSPID 585
Query: 517 FAAESKYLLEEIAK 476
FAAE++ LL++I+K
Sbjct: 586 FAAETRLLLQDISK 599
>sptr|Q9FME0|Q9FME0 Replication protein A1 (Putative RNA helicase).
Length = 629
Score = 498 bits (1282), Expect = e-139
Identities = 238/373 (63%), Positives = 304/373 (81%), Gaps = 2/373 (0%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGET-FLPPVQYNLVKIDQLGP 1415
G+ +S+GSL++ANKQFKTV+NDYE++LNEN+ VEEA E F+P ++N V I++LG
Sbjct: 250 GKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEELGL 309
Query: 1414 YVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTG 1235
YV +EL+D++GVVQSVSPT+S+RR+ DNE IPKRDI +AD+S KTV +SLWNDLAT G
Sbjct: 310 YVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLATGIG 369
Query: 1234 QELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTS 1055
QELLDM D SPV+AIKSLKV DFQGVSLSTI RS + INP+ PEAK LKSW+DSEGK+ S
Sbjct: 370 QELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEIS 429
Query: 1054 LAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWY 875
++ I + + + G +S+Y+DRV LSHITS+P++ +EKPVFFS A IS IKPDQ MWY
Sbjct: 430 MSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWY 489
Query: 874 RACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKII 695
+AC TCNKKVTEA SGYWCEGCQ+ ECSLRYIM +K++D +GE W+S FN+ AEKI+
Sbjct: 490 QACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKIL 549
Query: 694 GCSADELDRIRKEEGD-DSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVD 518
GCSADEL++++ EEG+ + Y KLKEATW H+FRVSVTQ+EY EKRQR+TV+G AP+D
Sbjct: 550 GCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLD 609
Query: 517 FAAESKYLLEEIA 479
FAAE++ LL++I+
Sbjct: 610 FAAETRLLLQDIS 622
>sptr|Q9SKI4|Q9SKI4 Putative replication protein A1 (At2g06510).
Length = 640
Score = 214 bits (544), Expect = 4e-54
Identities = 130/382 (34%), Positives = 218/382 (57%), Gaps = 10/382 (2%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGET-FLPPVQYNLVKIDQLGP 1415
G+ +SKGSL+ A K F +KN++E+ L + VE E +P Q++ I +
Sbjct: 266 GKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDI-E 324
Query: 1414 YVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTG 1235
++D++GVV SV+P++ + RK ET +R + + D+SGK V ++LW + G
Sbjct: 325 NAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEFCNRDG 383
Query: 1234 QELLDMVDSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKD 1061
++L +MVDS+ PV+AIK+ KVSDF G S+ TI + L INPD PEA L++W+D GKD
Sbjct: 384 RQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKD 443
Query: 1060 TSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNM 881
T+ IS + T GG S R +S I + +KP + ++ A IS IK D +
Sbjct: 444 TASFSISRD---TMPGGV-SRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTD-SF 498
Query: 880 WYRAC------TTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVF 719
Y AC CNKKVT + + + C+ C + EC RY++ +++ D TG W++ F
Sbjct: 499 CYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAF 558
Query: 718 NEHAEKIIGCSADELDRIRKE-EGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRIT 542
E E+I+GC A +L ++ E E ++ + +++ + ++ ++ + + Y +E+R ++T
Sbjct: 559 QETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMT 618
Query: 541 VRGEAPVDFAAESKYLLEEIAK 476
V V++ +ESKY+L+ + +
Sbjct: 619 VVKVDKVNYTSESKYMLDLLVR 640
>sptr|Q9FHJ6|Q9FHJ6 Replication protein A1-like.
Length = 853
Score = 202 bits (513), Expect = 1e-50
Identities = 117/378 (30%), Positives = 204/378 (53%), Gaps = 10/378 (2%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRE 1397
+S+G+L+ A K F + NDYE+ L+ + ++ E + +P ++ I + +
Sbjct: 373 ISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCEDDGTIPRYHFHFRNIGDI-ENMENNS 431
Query: 1396 LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDM 1217
D++G+V S+SPT+++ RK E + KR + + D SG++V +++W + GQ+L ++
Sbjct: 432 TTDVIGIVSSISPTVAIMRKNLTE-VQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNL 490
Query: 1216 VDSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPI 1043
DS PV+A+K+ ++ +F G +STIG S I PD PEA+ L+ WY+ EG++ I
Sbjct: 491 CDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSI 550
Query: 1042 SAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACT 863
S E R ++ I + EKP + ++ A IS +K + N Y AC
Sbjct: 551 SREFSGV------GRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVE-NFCYTACP 603
Query: 862 T------CNKKVTEAFGSGYW-CEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAE 704
C+KKVT G G W CE C K EC RYI+ I+L D T W + F E E
Sbjct: 604 IMNGDRPCSKKVTNN-GDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGE 662
Query: 703 KIIGCSADELDRIRKEEGD-DSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEA 527
+I+G SA +L ++ E D + + ++ + ++F++ + + Y +E+R + TV
Sbjct: 663 EIMGMSAKDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAE 722
Query: 526 PVDFAAESKYLLEEIAKL 473
+++++ ++++LE I KL
Sbjct: 723 KLNYSSNTRFMLEAIDKL 740
>sw|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit
(RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein).
Length = 616
Score = 199 bits (506), Expect = 1e-49
Identities = 127/370 (34%), Positives = 192/370 (51%), Gaps = 4/370 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGREL 1394
SKG+L+IANKQF VKNDYE++ N V E + LP VQ++ ID L L
Sbjct: 258 SKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDL-ENKSKDSL 316
Query: 1393 VDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMV 1214
VDI+G+ +S + + +N + KR+I + D SGK VT +LW + A D
Sbjct: 317 VDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDA--------DKF 368
Query: 1213 DSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPIS 1040
D S PV+AIK +VSDF G SLS + ST+ NPD+PEA L+ W+D+EG+ A
Sbjct: 369 DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ----ALDG 424
Query: 1039 AEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT 860
+ ++GG ++ L + S+ +KP +FS A + +++ +N Y+AC T
Sbjct: 425 VSISDLKSGGVGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLR-KENCMYQACPT 483
Query: 859 --CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCS 686
CNKKV + Y CE C R I+ + ++D WV+ F E AE I+G +
Sbjct: 484 QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQN 543
Query: 685 ADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAE 506
A L + K++ + ++ + A + +FRV V Y +E R + TV PVD+
Sbjct: 544 AAYLGEL-KDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREY 602
Query: 505 SKYLLEEIAK 476
+ L+ I +
Sbjct: 603 GRRLVMSIRR 612
>sw|P22336|RFA1_YEAST Replication factor-A protein 1 (RF-A)
(Single-stranded DNA-binding protein) (DNA binding
protein BUF2) (Replication protein A 69 kDa DNA- binding
subunit).
Length = 621
Score = 199 bits (505), Expect = 1e-49
Identities = 119/377 (31%), Positives = 205/377 (54%), Gaps = 5/377 (1%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ VSK L+ A QF + + YEL+L+ + ++EE E+ +P +N +K+D +
Sbjct: 252 GKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDESNVPKTHFNFIKLDAIQNQ 311
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQ 1232
VD++G++Q+++P + + + +RDI + DDSG ++++ LWN Q
Sbjct: 312 EVNSN-VDVLGIIQTINPHFELTSRAGKK-FDRRDITIVDDSGFSISVGLWN-------Q 362
Query: 1231 ELLDM-VDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTS 1055
+ LD + V AIK ++V+DF G SLS STL NP++PEA LK WYDS+G++ +
Sbjct: 363 QALDFNLPEGSVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRNAN 422
Query: 1054 LAPISAE--VGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNM 881
+ E +G A + R+ ++ ++ EK FFS+ A IS +K D N
Sbjct: 423 FITLKQEPGMGGQSAASLTKFIAQRITIARAQAENLGRSEKGDFFSVKAAISFLKVD-NF 481
Query: 880 WYRACTT--CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHA 707
Y AC+ CNKKV E + CE C N++ + RYI+ I + D T + W+++F++ A
Sbjct: 482 AYPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQA 541
Query: 706 EKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEA 527
++++G A+ L + KEE + + + + FR+ + Y ++ R R TV
Sbjct: 542 KQLLGVDANTLMSL-KEEDPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLH 600
Query: 526 PVDFAAESKYLLEEIAK 476
+++ AE+ YL +E++K
Sbjct: 601 SLNYRAEADYLADELSK 617
>sptr|Q9AVL8|Q9AVL8 Replication protein A 70kDa.
Length = 654
Score = 196 bits (499), Expect = 6e-49
Identities = 122/382 (31%), Positives = 212/382 (55%), Gaps = 12/382 (3%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGE-TFLPPVQYNLVKIDQLGPYVGGR 1400
VS+G+LR A K + + N++E+ L + V+ E + +P +++ I+++
Sbjct: 283 VSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIED-AQNN 341
Query: 1399 ELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLD 1220
++DI+GVV SV+P +++RK ET KR + + D SG++V +++W D G +L
Sbjct: 342 AILDIIGVVTSVNPCTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQG 400
Query: 1219 MVDSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAP 1046
MV+ PV+A+K+ KVSDF G S+ TI + INPD EA +L+ W+DS G+D
Sbjct: 401 MVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQWFDSGGRDAFTQS 460
Query: 1045 ISAEV--GATRAGGFKSMYSDRVFLSHITSDPAMGQ-EKPVFFSLYAIISHIKPDQNMWY 875
IS ++ GA+R K++ + D +G +KP + ++ A + K +++ +Y
Sbjct: 461 ISRDITPGASRNEIRKTVAQIK--------DEGLGMGDKPDWITVKATVIFFK-NESFFY 511
Query: 874 RACTT------CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNE 713
AC CNKKVT++ + C+ C + EC RY++ ++ D +G AWV+ F E
Sbjct: 512 TACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQE 571
Query: 712 HAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRG 533
++++GCSA EL+ + KE D + + + +L R+ V + Y +E++ + T
Sbjct: 572 AGQELLGCSATELNAL-KEREDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVK 630
Query: 532 EAPVDFAAESKYLLEEIAKLTA 467
VD + ESK+LL+ I+K +A
Sbjct: 631 VEKVDPSGESKFLLDLISKSSA 652
>sptrnew|EAA32097|EAA32097 Hypothetical protein.
Length = 610
Score = 196 bits (498), Expect = 8e-49
Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 5/365 (1%)
Frame = -1
Query: 1561 LRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRELVDIV 1382
+++A KQ+ + NDYEL+ + ++E+AE +T +P V++N V I +L V VDI+
Sbjct: 253 VQLAKKQWSNLPNDYELTFERDTVIEKAEDQTSVPQVRFNFVNIQELQD-VERDATVDII 311
Query: 1381 GVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDSSP 1202
GV++ V + K + KR++ + D++G +V ++W AT D+ P
Sbjct: 312 GVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATN--------FDAQP 363
Query: 1201 --VVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEVG 1028
+VA K KVSDF G SLS + T+ I+PD+PEA +LK WYDS G++ + A +
Sbjct: 364 ESIVAFKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHN---N 420
Query: 1027 ATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT--CN 854
GG D +S + + E P +F+L A + IK D N Y C + CN
Sbjct: 421 MQTLGGATGRKDDAKTISQVKEENLGTNEAPDYFALKATVVFIKQD-NFAYPGCRSEGCN 479
Query: 853 KKVTEAFGSGYW-CEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADE 677
+KVT+ G G W CE CQ N RYIM + ++D TG+ W+S F++ A I+G SADE
Sbjct: 480 RKVTD-MGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARVIMGKSADE 538
Query: 676 LDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKY 497
L IR E + + ++A FR + ++R R V AP+D+ E
Sbjct: 539 LMEIR-ETDETRLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVMSVAPLDYKMEGNK 597
Query: 496 LLEEI 482
L E I
Sbjct: 598 LNELI 602
>sptr|Q8X0J1|Q8X0J1 Probable single-stranded DNA-binding protein 68k
chain.
Length = 610
Score = 196 bits (498), Expect = 8e-49
Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 5/365 (1%)
Frame = -1
Query: 1561 LRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRELVDIV 1382
+++A KQ+ + NDYEL+ + ++E+AE +T +P V++N V I +L V VDI+
Sbjct: 253 VQLAKKQWSNLPNDYELTFERDTVIEKAEDQTSVPQVRFNFVNIQELQD-VERDATVDII 311
Query: 1381 GVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDSSP 1202
GV++ V + K + KR++ + D++G +V ++W AT D+ P
Sbjct: 312 GVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWGKTATN--------FDAQP 363
Query: 1201 --VVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEVG 1028
+VA K KVSDF G SLS + T+ I+PD+PEA +LK WYDS G++ + A +
Sbjct: 364 ESIVAFKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHN---N 420
Query: 1027 ATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT--CN 854
GG D +S + + E P +F+L A + IK D N Y C + CN
Sbjct: 421 MQTLGGATGRKDDAKTISQVKEENLGTNEAPDYFALKATVVFIKQD-NFAYPGCRSEGCN 479
Query: 853 KKVTEAFGSGYW-CEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADE 677
+KVT+ G G W CE CQ N RYIM + ++D TG+ W+S F++ A I+G SADE
Sbjct: 480 RKVTD-MGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARVIMGKSADE 538
Query: 676 LDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKY 497
L IR E + + ++A FR + ++R R V AP+D+ E
Sbjct: 539 LMEIR-ETDETRLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVMSVAPLDYKMEGNK 597
Query: 496 LLEEI 482
L E I
Sbjct: 598 LNELI 602
>sptr|Q8VEE4|Q8VEE4 Similar to replication protein A1 (70 kDa).
Length = 623
Score = 194 bits (493), Expect = 3e-48
Identities = 130/370 (35%), Positives = 188/370 (50%), Gaps = 4/370 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGREL 1394
SKG+L+IANKQF VKNDYE++ N V E LP VQ++ I L L
Sbjct: 267 SKGALKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQFDFTGIGDLESKAKDA-L 325
Query: 1393 VDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMV 1214
VDI+G+ +S ++ + K +N + KR+I + D SGK VT +LW + A D
Sbjct: 326 VDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTTLWGEDA--------DKF 377
Query: 1213 DSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPIS 1040
D S PV+AIK +VSDF G SLS + ST+ +NPD+PEA L+ W+DSEG+ IS
Sbjct: 378 DGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSIS 437
Query: 1039 AEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT 860
R+GG ++ L S+ +K +FS A + ++ +N Y+AC T
Sbjct: 438 DH----RSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLR-KENCMYQACPT 492
Query: 859 --CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCS 686
CNKKV + Y CE C + R I+ ++D WV+ F E AE I+G +
Sbjct: 493 QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQN 552
Query: 685 ADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAE 506
L + KE+ + ++ + A + FR+ V Y +E R + TV PVDF
Sbjct: 553 TMYLGEL-KEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDY 611
Query: 505 SKYLLEEIAK 476
+ L+ I K
Sbjct: 612 GRRLIANIRK 621
>sw|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit
(RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein).
Length = 609
Score = 192 bits (488), Expect = 1e-47
Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 4/371 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGREL 1394
SKG+L+IANKQ+ +VKNDYE++ N V + +P VQ+ V I +L +
Sbjct: 249 SKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSADVPMVQFEFVSIGELESK-NKDTV 307
Query: 1393 VDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMV 1214
+DI+GV ++V V K +N + KR I + D SGK V+ +LW + A D
Sbjct: 308 LDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDA--------DKF 359
Query: 1213 DSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPIS 1040
D S PVVAIK ++SDF G SLS + ST+ INPD+PEA L++W+DSEG+ IS
Sbjct: 360 DGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSIS 419
Query: 1039 AEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRACTT 860
G GG + S L + ++ EK +F+ A I +++ +N Y+AC +
Sbjct: 420 ESRGGGTGGGNTNWKS----LLEVKNENLGHGEKADYFTSVATIVYLR-KENCLYQACPS 474
Query: 859 --CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCS 686
CNKKV + + CE C K R I+ ++D W++ F E AE I+G +
Sbjct: 475 QDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQN 534
Query: 685 ADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAE 506
A L + KE+ + +Y + A + + FR V Y +E R + T PVD
Sbjct: 535 ATYLGEL-KEKNEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEY 593
Query: 505 SKYLLEEIAKL 473
S+ L+ I K+
Sbjct: 594 SRRLIMNIRKM 604
>sw|Q92372|RFA1_SCHPO Replication factor-A protein 1 (Single-stranded
DNA-binding protein p68 subunit).
Length = 609
Score = 191 bits (486), Expect = 2e-47
Identities = 114/367 (31%), Positives = 203/367 (55%), Gaps = 2/367 (0%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRE 1397
+S+ + IA KQ+ V+N+YEL + + +AE +T +P +++ V + ++G V
Sbjct: 252 ISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAEDQTAVPVAKFSFVSLQEVGD-VAKDA 310
Query: 1396 LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDM 1217
++D++GV+Q+V P + + + KRDI + D +G + ++LW A
Sbjct: 311 VIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFS------ 364
Query: 1216 VDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISA 1037
V ++A K +KV+DFQG SLS + ST+ ++PD+ E+ LK WYD +G+ A S
Sbjct: 365 VSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSV 424
Query: 1036 EVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC--T 863
+ +T + +S ++R ++ + ++ E P +FSL I +I+ +N+ Y AC
Sbjct: 425 -ISSTLSTTGRS--AERKNIAEVQAEHLGMSETPDYFSLKGTIVYIR-KKNVSYPACPAA 480
Query: 862 TCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSA 683
CNKKV + GS + CE C K RYI+ I + D TG+ W++VF++ + I+ +A
Sbjct: 481 DCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTA 539
Query: 682 DELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAES 503
DEL+ + +E +++++ + EA ++P++F+ Q + E R R TV +D+ ES
Sbjct: 540 DELNDL-QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEES 598
Query: 502 KYLLEEI 482
K L+ I
Sbjct: 599 KRLINFI 605
>sptr|O49671|O49671 Replication A protein-like.
Length = 717
Score = 187 bits (476), Expect = 3e-46
Identities = 120/377 (31%), Positives = 209/377 (55%), Gaps = 9/377 (2%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEA-EGETFLPPVQYNLVKIDQLGPYVGGR 1400
+S+GSLR A K F ++NDYE+ L+ + +++ E + +P Q++ I + +
Sbjct: 243 ISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIES-MENN 301
Query: 1399 ELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLD 1220
+VD++G+V S+SPT+++ RK T PKR + + D SG++V +++W D Q L D
Sbjct: 302 CIVDVIGIVSSISPTVTITRKNGTAT-PKRSLQLKDMSGRSVEVTMWGDF-----QSLCD 355
Query: 1219 MVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPIS 1040
PV+A+K+ ++S+F G ++STIG S L I+PD EA+ LK+W++ EGK +S
Sbjct: 356 S-GVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLS 414
Query: 1039 AEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC-- 866
E + R +S I + EKP + ++ A I ++K D N Y AC
Sbjct: 415 REFSGS------GKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFD-NFCYTACPI 467
Query: 865 ----TTCNKKVTEAFGSGYW-CEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEK 701
C+KKVT+ G G W CE C K+ EC RYI+ +++ D T V+ F E E+
Sbjct: 468 MNGDRPCSKKVTDN-GDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEE 526
Query: 700 IIGCSADELDRIRKEEGD-DSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAP 524
I+G SA +L ++ E D + + +++ + + F++ V + + +E+R + TV
Sbjct: 527 IMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDK 586
Query: 523 VDFAAESKYLLEEIAKL 473
++++A+++ +L + KL
Sbjct: 587 LNYSADTRTMLGAMDKL 603
>sptrnew|AAL39476|AAL39476 LD04815p.
Length = 603
Score = 173 bits (438), Expect = 7e-42
Identities = 111/375 (29%), Positives = 194/375 (51%), Gaps = 6/375 (1%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEG--ETFLPPVQYNLVKIDQLGPYVGG 1403
+SK L+ ANKQ+ ++ N YE++ + +V+ E + +P ++YNLV I + +
Sbjct: 239 ISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSG-MEN 297
Query: 1402 RELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELL 1223
+ VD +G+ + V S + N+ KRDI + D S ++++LW D A +
Sbjct: 298 KAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHV- 356
Query: 1222 DMVDSSPVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAP 1046
PV+ +K ++++F G SLS G S ++INPD+PEA L+ W+D+ G D+
Sbjct: 357 -----QPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANM 411
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
+SA G GG S ++ + L + +KP +F A++ HI +N +YRAC
Sbjct: 412 VSARTG----GG--SFSTEWMTLKDARARNLGSGDKPDYFQCKAVV-HIVKQENAFYRAC 464
Query: 865 --TTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
+ CNKKV + + CE C R ++ + + D T WVS FNE E+++G
Sbjct: 465 PQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLG 524
Query: 691 CSADELDRIRKEEGDDSYVLKLKEA-TWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDF 515
++ E+ E D + ++ A + H+F++ Y + R ++TV+ AP++
Sbjct: 525 HTSQEVGEAL--ENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINH 582
Query: 514 AAESKYLLEEIAKLT 470
+K+LL+E+ +LT
Sbjct: 583 KEYNKHLLKELQELT 597
>sw|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit
(RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DmRPA1).
Length = 603
Score = 173 bits (438), Expect = 7e-42
Identities = 111/375 (29%), Positives = 194/375 (51%), Gaps = 6/375 (1%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEG--ETFLPPVQYNLVKIDQLGPYVGG 1403
+SK L+ ANKQ+ ++ N YE++ + +V+ E + +P ++YNLV I + +
Sbjct: 239 ISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSG-MEN 297
Query: 1402 RELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELL 1223
+ VD +G+ + V S + N+ KRDI + D S ++++LW D A +
Sbjct: 298 KAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHV- 356
Query: 1222 DMVDSSPVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAP 1046
PV+ +K ++++F G SLS G S ++INPD+PEA L+ W+D+ G D+
Sbjct: 357 -----QPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGGGDSVANM 411
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
+SA G GG S ++ + L + +KP +F A++ HI +N +YRAC
Sbjct: 412 VSARTG----GG--SFSTEWMTLKDARARNLGSGDKPDYFQCKAVV-HIVKQENAFYRAC 464
Query: 865 --TTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
+ CNKKV + + CE C R ++ + + D T WVS FNE E+++G
Sbjct: 465 PQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLG 524
Query: 691 CSADELDRIRKEEGDDSYVLKLKEA-TWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDF 515
++ E+ E D + ++ A + H+F++ Y + R ++TV+ AP++
Sbjct: 525 HTSQEVGEAL--ENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINH 582
Query: 514 AAESKYLLEEIAKLT 470
+K+LL+E+ +LT
Sbjct: 583 KEYNKHLLKELQELT 597
>sptr|Q8SR55|Q8SR55 DNA replication factor A protein 1.
Length = 623
Score = 168 bits (425), Expect = 2e-40
Identities = 120/375 (32%), Positives = 180/375 (48%), Gaps = 2/375 (0%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ ++KG++++ANKQ+ T DYE+ L++++ V A + P +N VKI L
Sbjct: 282 GKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAADDGS-PKYFFNFVKISDL--- 337
Query: 1411 VGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQ 1232
G D +GVV+ V +V + + KRD V+ DD G +V ++LW A
Sbjct: 338 TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDGG-SVRLTLWGPKAELE-- 394
Query: 1231 ELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSL 1052
++S V+A+KS+KVS+F G+S+ST G S + NPD+ EA L+ WY S GKD +
Sbjct: 395 -----IESGMVLALKSIKVSEFNGISISTTGGSQVVTNPDIAEAHELEGWYQSIGKDMQV 449
Query: 1051 APISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYR 872
E K V S +T G + +K D +WY
Sbjct: 450 TLPRREE--------KRRLIQEVKESDLTYSTVQG-----------TVMFLKED-GLWYT 489
Query: 871 AC--TTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKI 698
+C CNKKV G Y CE C +C RY++ + L D +G+ WVS+F+E A
Sbjct: 490 SCKGEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFSGQMWVSLFDEVATSF 549
Query: 697 IGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVD 518
G SA E+ ++ EE ++ + LFR+ Q Y +E R R + +D
Sbjct: 550 FGISAREM-KVMSEEAPGELQALIRRMYFRECLFRIKSKQDSYNDEIRMRYSGLSVENLD 608
Query: 517 FAAESKYLLEEIAKL 473
ESK LL I K+
Sbjct: 609 ILKESKRLLGVIEKM 623
>sptrnew|EAA01767|EAA01767 AgCP12781 (Fragment).
Length = 614
Score = 165 bits (418), Expect = 2e-39
Identities = 111/377 (29%), Positives = 193/377 (51%), Gaps = 8/377 (2%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEA-EGETFLPPVQYNLVKIDQLGPYVGGR 1400
+SK L+ ANKQ+ ++KNDYE+++ + IV+E + + +P +QYN V I Q+ +
Sbjct: 251 ISKCQLKPANKQYTSLKNDYEMTMTNDTIVQECKDADGSMPEIQYNFVPISQIAN-MEPN 309
Query: 1399 ELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLD 1220
+VD++G+ + S + K + KR+I + D S +V ++LW D A
Sbjct: 310 AMVDVIGMCKDASDVVQFTAKTSGRELRKREITLVDSSNASVQLTLWGDDAQNFP----- 364
Query: 1219 MVDSSPVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPI 1043
+ PVV +K +VS+F G SL IG S +++NPDL A ++ W+++ G + S++ +
Sbjct: 365 -ATTHPVVLLKGARVSEFGGGKSLGLIGGSVMKLNPDLEMAHKVRGWFENGGSEASVSSV 423
Query: 1042 SAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC- 866
SA R GG + ++ + +KP +F + A+I IK N Y+AC
Sbjct: 424 SA-----RTGGAAGVSTEWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIK-SANAVYKACP 477
Query: 865 -TTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGC 689
CNKKV + + CE C R ++ + + D T WV+VF E AE+++G
Sbjct: 478 QADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTVFTELAEEMLGK 537
Query: 688 SADELD---RIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEK-RQRITVRGEAPV 521
S+ E+ +KEE + + ++ +F++ T+ EY E+ R + + APV
Sbjct: 538 SSQEIGSSLEYQKEEAEKLFT----SISFKSFVFKLR-TKVEYFGEQPRNKTSAVSVAPV 592
Query: 520 DFAAESKYLLEEIAKLT 470
+ + L++ I +LT
Sbjct: 593 NHKEYNALLIKSIQELT 609
>sw|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 1) (Single-stranded
DNA-binding protein P51 subunit).
Length = 467
Score = 157 bits (396), Expect = 5e-37
Identities = 109/325 (33%), Positives = 165/325 (50%), Gaps = 6/325 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLN---ENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGG 1403
S G ++ AN++F V NDYEL+ + E + + LP +YN V I+ L G
Sbjct: 84 SGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPMQRYNFVPIELLKQREVG 143
Query: 1402 RELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELL 1223
LVD++GVV V S+ +K + KR++ + D S V ++ WND A +
Sbjct: 144 -SLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVEVTFWNDEAKAWNYPV- 200
Query: 1222 DMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINP-DLPEAKNLKSWYDSEGKDTSLAP 1046
VVA++ LKV F GV+LS+ ++ +++NP DLP+ K L +WY S G ++
Sbjct: 201 -----GTVVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDVKKLATWYVSTGGANVVSL 255
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
S +GA GG + R +L I S+ KP + + + + K D WY AC
Sbjct: 256 SSQGLGAGGGGGGEGNRG-RKYLDEIQSEGIGRGAKPEYVDVRCVPIYFKQDAQ-WYDAC 313
Query: 865 TTCNKKVTE--AFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
TCNKKVTE A G + CE C RY++ I+++D + W+++FNE + G
Sbjct: 314 PTCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQVTDNVSQVWLTLFNEAGVEFFG 372
Query: 691 CSADELDRIRKEEGDDSYVLKLKEA 617
A EL R +E D Y+ KL +A
Sbjct: 373 MEASELKRRAQE--DPLYIAKLAQA 395
>sptr|Q962V7|Q962V7 Replication protein A subunit 1.
Length = 467
Score = 153 bits (387), Expect = 6e-36
Identities = 109/324 (33%), Positives = 168/324 (51%), Gaps = 6/324 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETF---LPPVQYNLVKIDQLGPYVGG 1403
S G ++ AN++F V NDYEL+ + ++ + A +T LP +YN V I+ L G
Sbjct: 84 SGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPMQRYNFVPIELLKQREVG 143
Query: 1402 RELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELL 1223
LVD++GVV V S+ +K + KR++ + D + V ++ WND A +
Sbjct: 144 -SLVDVLGVVLKVDEVSSITQKSKGRELVKRNVKMGDMTA-AVEVTFWNDEAKAWCYPV- 200
Query: 1222 DMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINP-DLPEAKNLKSWYDSEGKDTSLAP 1046
VVA++ LKV F GV+LS+ ++ ++INP DL + K L +WY + G +
Sbjct: 201 -----GTVVALRQLKVGSFDGVTLSSTYKTKIDINPTDLADVKKLATWYVTTGGANVTSL 255
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
S +GA G +S R +L I S+ KP + + + + K D WY AC
Sbjct: 256 SSQGLGAASGAGGESDRG-RKYLDEIQSEGIGRGLKPEYVDVRCVPIYFKQDAQ-WYDAC 313
Query: 865 TTCNKKVTE--AFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
TCNKKVTE A G + CE C K + RY++ I+++D +AW+++FNE + G
Sbjct: 314 PTCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQVTDNVSQAWLTLFNEAGIEFFG 372
Query: 691 CSADELDRIRKEEGDDSYVLKLKE 620
A EL R +E D Y+ KL +
Sbjct: 373 MEAAELKRRAQE--DPLYIAKLAQ 394
>sw|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit
(RP-A) (RF-A) (Replication factor-A protein 1).
Length = 655
Score = 142 bits (357), Expect = 2e-32
Identities = 104/366 (28%), Positives = 176/366 (48%), Gaps = 5/366 (1%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRE 1397
+S GS++ ANK+F +DYE++L ++I+E P + VK+ ++ Y G +
Sbjct: 295 LSGGSVKQANKKFNNTGHDYEITLRSDSIIEAGGELLAAPKLILKRVKLGEIAGYAG--Q 352
Query: 1396 LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDM 1217
L+D++ VV+ + P + +++ KR++ + D+SG V ++LW D AT +
Sbjct: 353 LIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWGDEATKA------L 406
Query: 1216 VDS--SPVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAP 1046
VD V+A K + +F G SL T + + P++ L WY + T +
Sbjct: 407 VDDYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKPTTEVKM 466
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
+S G + + R +K + ++ A+I+ + P N YR C
Sbjct: 467 MSQAAGGSNE-------APRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPT-NALYRGC 518
Query: 865 TT--CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
+ C KK+ G Y CE C KN ++ Y+M +LSD TG+ +V+ F + A KI+G
Sbjct: 519 ASEGCQKKLVGENGD-YRCEKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVG 577
Query: 691 CSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFA 512
SA EL + +E D Y + +VP ++R+ Y E RQ++TV G VD
Sbjct: 578 KSAAELGELH-DESPDEYNAIFERLQFVPKMWRLRCKMDSYNEEVRQKMTVYG---VDDV 633
Query: 511 AESKYL 494
+ KY+
Sbjct: 634 NQDKYI 639
>sptrnew|EAA15908|EAA15908 Putative replication A protein.
Length = 1168
Score = 137 bits (344), Expect = 6e-31
Identities = 102/398 (25%), Positives = 199/398 (50%), Gaps = 24/398 (6%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVE-EAEGETFLPPVQYNLVKIDQLGP 1415
G+ ++SKG+++ ANK+F T+K+D E++L+EN+I+E E + +P YN I ++
Sbjct: 774 GKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDMNIPKYIYNFYSISEIKA 833
Query: 1414 YVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTG 1235
+ LVD++G+V S + K + K+D+++ D++ +T+ ++LW + A
Sbjct: 834 NMNTGTLVDVIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTLWGENAVK-- 891
Query: 1234 QELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDT- 1058
E +++ ++ ++ K LKV ++QG L + ++ +EINP+L +A LK+W+ + K+
Sbjct: 892 MEEMNITENC-IICFKCLKVGEWQGKKLESHPKTKVEINPELDKAYTLKNWWVNNKKNVY 950
Query: 1057 ---SLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQ 887
+L ++ K++ + ++ + G K + F+ + I HI +
Sbjct: 951 NTINLTTTTSNNNMLNLESQKTIQEIKKNVNLANEEVLSG--KGIIFTTFGFIDHIY-NA 1007
Query: 886 NMWYRACTTCNKKVT------------EAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPT 743
Y AC CNKK+ + +C C KN+ Y + +K++D T
Sbjct: 1008 IPVYSACPNCNKKMVATVIEDGEQDMDQNVSESMYCAKCNKNNIPV-YNYSINLKITDNT 1066
Query: 742 GEAWVSVFNEHAEKII-GCSADELDRIRKE----EGDDSYVLKLKEATWVPHLFRVSVTQ 578
VS F A+ I+ G SA+E ++R+E E +++ L +++A FR+
Sbjct: 1067 DSLRVSAFANSAKTIMNGLSAEEFMKLRQEYISQENIENFDL-IEKAKLNEFFFRIKAYM 1125
Query: 577 HEYMNEKRQRITVRGEAPVD--FAAESKYLLEEIAKLT 470
+M+E ++ T+ P+ +YL++EI T
Sbjct: 1126 TSHMDEIKKNYTILETIPLSKLLVDNCRYLIKEIKLAT 1163
>sptr|Q9U0J0|Q9U0J0 Putative replication A protein.
Length = 1145
Score = 133 bits (334), Expect = 8e-30
Identities = 106/397 (26%), Positives = 195/397 (49%), Gaps = 22/397 (5%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGET-FLPPVQYNLVKIDQLGP 1415
G+ ++SKG +++ANK+F T+ +DYE++L+EN+++E + E +P YN + ID +
Sbjct: 751 GKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYNFISIDNIKN 810
Query: 1414 YVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTG 1235
G VDI+ VV + + + K + KRD+ + D+S T+ ++LW AT
Sbjct: 811 MNTG-SFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLWEKNATIID 869
Query: 1234 QELLDMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLEINPD-LPEAKNLKSWYDSEGKDT 1058
+ +++ D+ +V K LK+ ++QG L + R+ +EINPD + +A LK+W+ K
Sbjct: 870 E--MNLRDNC-IVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYILKNWW-IHNKKM 925
Query: 1057 SLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMW 878
I+ K++ + ++ + + G K + F+ Y I I + +
Sbjct: 926 ICNSINLSSNYINIETQKTIQEIKKNVNLVNEEALSG--KGIMFTTYGFIDQIYNNMPV- 982
Query: 877 YRACTTCNKKV-------------TEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGE 737
Y AC CNKK+ + +C C KN+ Y + +K++D T
Sbjct: 983 YSACPDCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV-YNYYINLKITDSTDS 1041
Query: 736 AWVSVFNEHAEKII-GCSADELDRIRKE----EGDDSYVLKLKEATWVPHLFRVSVTQHE 572
S F A+ I+ G SA+E ++R+E E +++ + +++ FR+ V
Sbjct: 1042 IRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDI-IEKIKLNEFFFRIKVYMTS 1100
Query: 571 YMNEKRQRITVRGEAPVD--FAAESKYLLEEIAKLTA 467
+M+E ++ T+ APV +YL++ I LT+
Sbjct: 1101 HMDELKKNYTIIDIAPVGKLLIDNCRYLIKSIKNLTS 1137
>sptr|O97472|O97472 F18A1.5 protein.
Length = 658
Score = 129 bits (323), Expect = 2e-28
Identities = 96/351 (27%), Positives = 170/351 (48%), Gaps = 5/351 (1%)
Frame = -1
Query: 1576 VSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRE 1397
+S GS+R ANK+F +DYE++L +++VE P + V + ++ + G E
Sbjct: 295 LSGGSVRQANKKFNNTGHDYEITLRNDSVVEAGGELLAAPKLNLKRVSLAEIAGHCG--E 352
Query: 1396 LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDM 1217
++D++ +V+ + + +T+ KR++ + D+S V ++LW D A
Sbjct: 353 MIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTLWGDEAIKAN------ 406
Query: 1216 VDS--SPVVAIKSLKVSDFQG-VSLSTIGRSTLEINPDLPEAKNLKSWYDSEGKDTSLAP 1046
VD V+A K + +F G SL T + + P++ L WY +E + L
Sbjct: 407 VDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSELYDWYTTEKPHSELKL 466
Query: 1045 ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKPDQNMWYRAC 866
IS +GG + R +K + S+ A+I+ I P+ + Y+ C
Sbjct: 467 ISQT-----SGGMSE--APRTIAGLQEMQFGKDSDKGDYASVKAMITRINPNSAL-YKGC 518
Query: 865 TT--CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVFNEHAEKIIG 692
+ C KKV E+ G Y CE C K+ ++ Y+M +LSD TG+ +V+ F + A K++G
Sbjct: 519 ASEGCQKKVIESDGE-YRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVG 577
Query: 691 CSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITV 539
+A E+ + K+E + Y + +VP ++R+ Y E RQ++TV
Sbjct: 578 KTAQEVGDL-KDENLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQKMTV 627
>sptrnew|AAP92635|AAP92635 Cb1-727.
Length = 680
Score = 121 bits (303), Expect = 3e-26
Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGREL 1394
SKG+L+IANKQF VKNDYE++ N V E LP VQ++ I L L
Sbjct: 245 SKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQFDFTGIGDLESK-SKDSL 303
Query: 1393 VDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMV 1214
VDI+G+ +S + K +N + KR+I + D SGK VT +LW + A D
Sbjct: 304 VDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATLWGEDA--------DKF 355
Query: 1213 DSS--PVVAIKSLKVSDFQGVSLSTIGRSTLEINPDLPEAKNLKSWY 1079
D S PV+AIK +VSDF G SLS + ST+ +NPD+PEA L+ W+
Sbjct: 356 DGSRQPVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKLRGWH 402
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 9/211 (4%)
Frame = -1
Query: 1081 YDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISH 902
+DSEG+ A + R+GG ++ L S+ +K +FS A +
Sbjct: 473 FDSEGQ----ALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVF 528
Query: 901 IKPDQNMWYRACTT--CNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWV 728
++ + N Y+AC T CNKKV + Y CE C + R I+ + ++D WV
Sbjct: 529 LRKE-NCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWV 587
Query: 727 SVFNEHAEKIIGCSADELDRIRKEEG-------DDSYVLKLKEATWVPHLFRVSVTQHEY 569
+ F E AE I+G + L ++++ G + ++ + A + FR+ V Y
Sbjct: 588 TCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVKLETY 647
Query: 568 MNEKRQRITVRGEAPVDFAAESKYLLEEIAK 476
+E R + TV PVD+ SK L+ I K
Sbjct: 648 NDESRIKATVIDVKPVDYRDYSKRLIMNIRK 678
>sptr|Q9Y1I9|Q9Y1I9 Replication protein A large subunit.
Length = 473
Score = 120 bits (301), Expect = 6e-26
Identities = 96/383 (25%), Positives = 175/383 (45%), Gaps = 23/383 (6%)
Frame = -1
Query: 1555 IANKQFKTVKNDYELSLNENAIVEEAEGETF----LPPVQYNLVKIDQLGPYVGGRELVD 1388
++N +F N YE++ ++ V + E + P + VK + P +VD
Sbjct: 80 VSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPKYVFTTVKDIREIPVPS---IVD 136
Query: 1387 IVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELLDMVDS 1208
++G+V+ SP+ V + +N+ + +R I V D +G + I+LW +LA + ++ L
Sbjct: 137 LIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINITLWGELAEVSDEKFL----G 192
Query: 1207 SPVVAIKSLKVSDFQGVSLSTI-GRSTLEINPDLPEAKNLKSWYDSEGKDTSLAPISAEV 1031
+PVVA+KS+++ ++QG ST+ GRS +E + D + + L+ WYDS G IS
Sbjct: 193 NPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKMEELRDWYDSIGSSIKFESISNIS 252
Query: 1030 GATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVF-----FSLYAIISHI----------- 899
F+ +D+++ D E F F + A IS I
Sbjct: 253 SNESPNNFR--VNDKLYSGRTLKDIRNRMEDNEFSSTPSFQVIARISKIGSINVNQQVSG 310
Query: 898 KPDQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNDSECSLRYIMVIKLSDPTGEAWVSVF 719
++ Y AC C KKV F + Y CE C ++ +++ + + D T V F
Sbjct: 311 DKGGSLTYDACPICKKKV--LFSTSY-CEKCDESVVP-ETKFLFPVTIEDHTCSLTVQCF 366
Query: 718 NEHAEKIIGCSADELDRIRKEEGDD--SYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRI 545
+E I + + ++ D +++L L + W + ++ + EY N+K+ R
Sbjct: 367 HEIGSTFIKELSASACKEMEQNNDKKLNFILNL-QCMWRHYNLKIQLKAEEYNNQKKTRA 425
Query: 544 TVRGEAPVDFAAESKYLLEEIAK 476
++ P+D S +LE I++
Sbjct: 426 IIQSAEPIDLNQISYLMLESISQ 448
>sptrnew|EAA17060|EAA17060 Replication protein A large subunit,
putative.
Length = 487
Score = 81.6 bits (200), Expect = 3e-14
Identities = 87/400 (21%), Positives = 172/400 (43%), Gaps = 33/400 (8%)
Frame = -1
Query: 1573 SKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPYVGGRE- 1397
SKG + IAN ++ TVK+ YEL+ NE++ + E + + + +Q N+ ++ + +E
Sbjct: 79 SKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEI-KIQKNISLVNLRDIKIATKET 137
Query: 1396 --LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLWNDLATTTGQELL 1223
D++G+V+ + P +++ K N+ I K++I++ DD+ + IS W+ ++L
Sbjct: 138 PFTADLIGIVKHICPPNNLKTKQGNDII-KQNIIIVDDTKHSFEISFWDSNVNLIEKDLK 196
Query: 1222 DMVDSSPVVAIKSLKVSDFQGVSLSTIG-RSTLE----INPDLPE-AKNLKSWYDSEGKD 1061
+ + + ++ + ++ + T G S++E +N +L E + WY++ GK
Sbjct: 197 E----NEIYIFTNISIRNWNDMKNGTFGVTSSIEKVENLNDELKEKCLGISEWYNNNGKY 252
Query: 1060 TSLAP----ISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIKP 893
+S +V T + + V + +G+ K +++ +
Sbjct: 253 EQFTNMKNILSNDVIQTPDKHYALSDVNDVLTKISGTYTLVGRIKRIYW------KSKEN 306
Query: 892 DQNMWYRACTTCNKKVTEAFGSG------------------YWCEGCQKNDSECSLRYIM 767
+ +Y ACT C KK+ + Y C C +N+ + Y
Sbjct: 307 EHRFYYPACTKCKKKLLSSGQDNTQGGDYDNSNFNNEENCVYSCMNCDENNVKPFYNYTF 366
Query: 766 VIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGD--DSYVLKLKEATWVPHLFR 593
D +G + F++ ++G A+EL + ++ D +Y KE V
Sbjct: 367 NFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDSLDYLFNYDFLYKEYKVV----- 421
Query: 592 VSVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEIAKL 473
V V+Q Y +R T P + ++ YLL EI L
Sbjct: 422 VRVSQKIYNGIERVNFTAMRIFPQKY-SDISYLLNEIQLL 460
>sptr|Q803R4|Q803R4 Hypothetical protein.
Length = 381
Score = 78.6 bits (192), Expect = 2e-13
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Frame = -1
Query: 1591 GRGTRVSKGSLRIANKQFKTVKNDYELSLNENAIVEEAEGETFLPPVQYNLVKIDQLGPY 1412
G+ +SKG+L+IANKQF ++KNDYE++LN + E +P +Q + V I L
Sbjct: 239 GKVFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSNDVPMLQCDFVSIADL--- 295
Query: 1411 VGGRE---LVDIVGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSGKTVTISLW-NDLAT 1244
RE ++D++GV ++ + K E + KR+I + D SG+ + +++W +D T
Sbjct: 296 -ESREKDTILDVIGVCKNAEDVARIMTKNSRE-VSKRNIQLIDMSGRVIQLTMWGSDAET 353
Query: 1243 TTGQELLDMVDSSPVVAIKSLKVSDFQG 1160
G P++AIK ++SDF G
Sbjct: 354 FDG-------SGQPILAIKGARLSDFGG 374
>sptr|Q94DN4|Q94DN4 P0483G10.9 protein (P0401G10.31 protein).
Length = 501
Score = 76.6 bits (187), Expect = 9e-13
Identities = 82/352 (23%), Positives = 146/352 (41%), Gaps = 22/352 (6%)
Frame = -1
Query: 1564 SLRIANKQFKTVKNDYELSLNENAIVEEA-EGETFLPPVQYNLVKIDQLGPYVGGREL-V 1391
+++ AN+ ++ V ND+ + ++ +EE + P + ++L ++ VG V
Sbjct: 119 TVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPTITFSLTHFQEIPSLVGKNIFYV 178
Query: 1390 DIVGVVQSVSPTLSVRRKIDNETIPKRDIVVAD-----------DSGKTVTISLWNDLAT 1244
DI+GV+ +S T VR + + KR + + D S T+ ++LW D +T
Sbjct: 179 DIMGVITEISSTSIVRPRSRDADSLKRTLQICDASYTNFTVNAKHSNSTLPVTLWGDRST 238
Query: 1243 TTGQELL--DMVDSSPVVAIKSLKVSDFQGVSLSTIGRSTLE--INPDLPEAKNLKSWYD 1076
E + D VV V D+ G+ L+ G S + IN D+P+ LK
Sbjct: 239 AFDAEKIYKDGQTKPQVVVFVGTLVRDYAGIGLTITGSSPCKWYINLDIPDVLKLK---- 294
Query: 1075 SEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMGQEKPVFFSLYAIISHIK 896
E + PI A A + ++ + +P + K F + I I
Sbjct: 295 -ESFSVNFQPIKWVENAAPAFN-QDTPEEKTIKEILKLNP--HKYKRARFIVNVTIKSIH 350
Query: 895 PDQNMWYRACTTCNKKVTEAFGSGYWCEGCQKNDSECSL-----RYIMVIKLSDPTGEAW 731
+ WY +C C + ++ +GS Y C C C + RY +V+ +D T EA
Sbjct: 351 DENCWWYNSCDRC-CRTSKPYGSTYRCSSC------CYIGMPVPRYKVVLTTADNTSEAA 403
Query: 730 VSVFNEHAEKIIGCSADELDRIRKEEGDDSYVLKLKEATWVPHLFRVSVTQH 575
+F A ++I + L +E D +++ ++ VS T+H
Sbjct: 404 FVLFGRIAHRLIHRPVESL---IEENPPDFIPAEIQALVDQAFVWNVSFTEH 452
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,130,394,399
Number of Sequences: 1272877
Number of extensions: 24622746
Number of successful extensions: 72437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72268
length of database: 406,886,216
effective HSP length: 127
effective length of database: 245,230,837
effective search space used: 99563719822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)