BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q93WR5|Q93WR5 Gip1-like protein. 125 4e-28
sptr|Q93WR4|Q93WR4 Gip1-like protein. 124 8e-28
sptr|Q93WR6|Q93WR6 Gibberellin induced protein 3. 119 2e-26
sptr|Q9FR10|Q9FR10 Gibberellin-induced protein 1 (Putative gibbe... 119 2e-26
sptr|Q43615|Q43615 Gip1 protein. 119 2e-26
sw|P27057|GST1_LYCES GAST1 protein precursor. 119 3e-26
sw|P46690|GAS4_ARATH Gibberellin-regulated protein 4 precursor. 118 7e-26
sptr|Q9CA50|Q9CA50 GAST1-like protein. 112 3e-24
sptr|O65066|O65066 GASA5-like protein. 112 3e-24
sptr|O65918|O65918 GASA5-like protein (Fragment). 112 4e-24
sptr|Q84J95|Q84J95 Hypothetical protein. 109 3e-23
sptr|Q38939|Q38939 GASA5. 109 3e-23
sptr|O80848|O80848 Putative gibberellin-regulated protein. 108 4e-23
sw|P47926|RSI1_LYCES RSI-1 protein precursor (TR132). 108 4e-23
sptrnew|AAQ57667|AAQ57667 GIP1-like protein (Fragment). 89 4e-17
sptr|O80641|O80641 GAST1/GASA-like protein. 80 2e-14
sptr|Q8LFM2|Q8LFM2 Contains similarity to gibberellin-stimulated... 76 4e-13
sptr|Q9FJF0|Q9FJF0 Similarity to gibberellin-stimulated transcri... 76 4e-13
sw|P46688|GAS2_ARATH Gibberellin-regulated protein 2 precursor. 75 5e-13
sptr|Q9LFR3|Q9LFR3 Hypothetical 29.1 kDa protein (AT5g14920/F2G1... 75 7e-13
sptr|Q8LBI7|Q8LBI7 Hypothetical protein. 75 7e-13
sptr|Q8GWK5|Q8GWK5 Putative gibberellin-regulated protein. 75 7e-13
sptr|Q948Z4|Q948Z4 Snakin-1. 74 1e-12
sptrnew|AAK96495|AAK96495 AT4g09600/T25P22_40. 73 3e-12
sw|P46687|GAS3_ARATH Gibberellin-regulated protein 3 precursor. 73 3e-12
sptr|O82328|O82328 GAST1/GASA-like protein (Putative gibberellin... 71 1e-11
sptr|Q94HA1|Q94HA1 Hypothetical 9.9 kDa protein. 70 2e-11
sptr|Q9XGJ3|Q9XGJ3 GEG protein. 68 1e-10
sptr|Q93X17|Q93X17 Snakin2 precursor. 64 2e-09
sptr|Q8L8X0|Q8L8X0 GAST1-like protein. 64 2e-09
>sptr|Q93WR5|Q93WR5 Gip1-like protein.
Length = 105
Score = 125 bits (314), Expect = 4e-28
Identities = 48/65 (73%), Positives = 53/65 (81%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L P +C P+C RCS+TQY AC+ C KCC KCLCVPPGFYGNKG CPCYNNWKTKEG
Sbjct: 41 SLKPSQCLPQCTRRCSQTQYHNACMLFCQKCCNKCLCVPPGFYGNKGVCPCYNNWKTKEG 100
Query: 422 GPKCP 436
GPKCP
Sbjct: 101 GPKCP 105
>sptr|Q93WR4|Q93WR4 Gip1-like protein.
Length = 104
Score = 124 bits (312), Expect = 8e-28
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L P +C P+C RCS TQY AC+ C KCC KCLCVPPGFYGNKG CPCYNNWKTKEG
Sbjct: 40 SLKPTQCLPQCIRRCSHTQYHNACMLFCQKCCKKCLCVPPGFYGNKGVCPCYNNWKTKEG 99
Query: 422 GPKCP 436
GPKCP
Sbjct: 100 GPKCP 104
>sptr|Q93WR6|Q93WR6 Gibberellin induced protein 3.
Length = 112
Score = 119 bits (299), Expect = 2e-26
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L+P +C PKC RCSKT ++K C+ C KCCAKCLCVP G YGNK CPCYNNWKTKEG
Sbjct: 48 SLHPQDCQPKCTYRCSKTSFKKPCMFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKEG 107
Query: 422 GPKCP 436
GPKCP
Sbjct: 108 GPKCP 112
>sptr|Q9FR10|Q9FR10 Gibberellin-induced protein 1 (Putative
gibberellin induced protein 2).
Length = 112
Score = 119 bits (299), Expect = 2e-26
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L+P +C PKC RCSKT ++K C+ C KCCAKCLCVP G YGNK CPCYNNWKTKEG
Sbjct: 48 SLHPQDCQPKCTYRCSKTSFKKPCMFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKEG 107
Query: 422 GPKCP 436
GPKCP
Sbjct: 108 GPKCP 112
>sptr|Q43615|Q43615 Gip1 protein.
Length = 112
Score = 119 bits (299), Expect = 2e-26
Identities = 46/65 (70%), Positives = 52/65 (80%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L+P +C PKC RCSKT ++K C+ C KCCAKCLCVP G YGNK CPCYNNWKTKEG
Sbjct: 48 SLHPQDCQPKCTYRCSKTSFKKPCMFFCQKCCAKCLCVPAGTYGNKQTCPCYNNWKTKEG 107
Query: 422 GPKCP 436
GPKCP
Sbjct: 108 GPKCP 112
>sw|P27057|GST1_LYCES GAST1 protein precursor.
Length = 112
Score = 119 bits (298), Expect = 3e-26
Identities = 46/64 (71%), Positives = 51/64 (79%)
Frame = +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L+P +C PKC RCSKT Y+K C+ C KCCAKCLCVP G YGNK +CPCYNNWKTK GG
Sbjct: 49 LHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGG 108
Query: 425 PKCP 436
PKCP
Sbjct: 109 PKCP 112
>sw|P46690|GAS4_ARATH Gibberellin-regulated protein 4 precursor.
Length = 106
Score = 118 bits (295), Expect = 7e-26
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L +C +C RC KTQY KAC+T CNKCC KCLCVPPG+YGNK C CYNNWKT+EG
Sbjct: 42 SLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEG 101
Query: 422 GPKCP 436
GPKCP
Sbjct: 102 GPKCP 106
>sptr|Q9CA50|Q9CA50 GAST1-like protein.
Length = 80
Score = 112 bits (281), Expect = 3e-24
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L ++C +C RCS T+Y K C+ C KCCAKCLCVPPG YGNK CPCYNNWKT++G
Sbjct: 16 SLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQG 75
Query: 422 GPKCP 436
GPKCP
Sbjct: 76 GPKCP 80
>sptr|O65066|O65066 GASA5-like protein.
Length = 110
Score = 112 bits (281), Expect = 3e-24
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L P EC +C RCS T ++K C+ C KCCAKCLCVPPG +GNK CPCYNNWKT++G
Sbjct: 46 SLRPSECGQRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTFGNKQVCPCYNNWKTQQG 105
Query: 422 GPKCP 436
GPKCP
Sbjct: 106 GPKCP 110
>sptr|O65918|O65918 GASA5-like protein (Fragment).
Length = 62
Score = 112 bits (280), Expect = 4e-24
Identities = 42/62 (67%), Positives = 48/62 (77%)
Frame = +2
Query: 251 PWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPK 430
P EC +C RCS T ++K C+ C KCCAKCLCVPPG YGNK CPCYNNWKT++GGPK
Sbjct: 1 PSECGQRCSYRCSATSHKKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPK 60
Query: 431 CP 436
CP
Sbjct: 61 CP 62
>sptr|Q84J95|Q84J95 Hypothetical protein.
Length = 97
Score = 109 bits (273), Expect = 3e-23
Identities = 42/64 (65%), Positives = 48/64 (75%)
Frame = +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L P +C+ KC RCS T ++K C+ C KCC KCLCVPPG +GNK CPCYNNWKTKEG
Sbjct: 34 LKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGR 93
Query: 425 PKCP 436
PKCP
Sbjct: 94 PKCP 97
>sptr|Q38939|Q38939 GASA5.
Length = 97
Score = 109 bits (273), Expect = 3e-23
Identities = 42/64 (65%), Positives = 48/64 (75%)
Frame = +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L P +C+ KC RCS T ++K C+ C KCC KCLCVPPG +GNK CPCYNNWKTKEG
Sbjct: 34 LKPQQCNSKCSYRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGR 93
Query: 425 PKCP 436
PKCP
Sbjct: 94 PKCP 97
>sptr|O80848|O80848 Putative gibberellin-regulated protein.
Length = 103
Score = 108 bits (271), Expect = 4e-23
Identities = 44/65 (67%), Positives = 47/65 (72%)
Frame = +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L P EC C RCS T +RK CL CNKCC KCLCVP G YG+K CPCYNNW TKEG
Sbjct: 39 SLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEG 98
Query: 422 GPKCP 436
GPKCP
Sbjct: 99 GPKCP 103
>sw|P47926|RSI1_LYCES RSI-1 protein precursor (TR132).
Length = 96
Score = 108 bits (271), Expect = 4e-23
Identities = 41/64 (64%), Positives = 48/64 (75%)
Frame = +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L P +C P+C RCS T ++K C+ C KCCA CLCVP G YGNK +CPCYNNWKT+EG
Sbjct: 33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGK 92
Query: 425 PKCP 436
PKCP
Sbjct: 93 PKCP 96
>sptrnew|AAQ57667|AAQ57667 GIP1-like protein (Fragment).
Length = 39
Score = 89.4 bits (220), Expect = 4e-17
Identities = 32/38 (84%), Positives = 34/38 (89%)
Frame = +2
Query: 323 CNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C KCC KCLCVPPGFYGNK CPCYNNWKT++GGPKCP
Sbjct: 2 CQKCCRKCLCVPPGFYGNKAVCPCYNNWKTQQGGPKCP 39
>sptr|O80641|O80641 GAST1/GASA-like protein.
Length = 87
Score = 80.1 bits (196), Expect = 2e-14
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C KC RCSK + CL CN CC KC CVP G +G+K CPCY + K +GG KCP
Sbjct: 29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
>sptr|Q8LFM2|Q8LFM2 Contains similarity to gibberellin-stimulated
transcript 1 like protein (Hypothetical protein).
Length = 89
Score = 75.9 bits (185), Expect = 4e-13
Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKC-LCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C KC RCSK + CL CN CC KC CVP G YGNK CPCY + K +G KCP
Sbjct: 30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89
>sptr|Q9FJF0|Q9FJF0 Similarity to gibberellin-stimulated transcript
1 like protein.
Length = 88
Score = 75.9 bits (185), Expect = 4e-13
Identities = 32/60 (53%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKC-LCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C KC RCSK + CL CN CC KC CVP G YGNK CPCY + K +G KCP
Sbjct: 29 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 88
>sw|P46688|GAS2_ARATH Gibberellin-regulated protein 2 precursor.
Length = 99
Score = 75.5 bits (184), Expect = 5e-13
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
+C +C RCSK+ K CL CN CC++C CVPPG GN CPCY + T G KCP
Sbjct: 40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99
>sptr|Q9LFR3|Q9LFR3 Hypothetical 29.1 kDa protein
(AT5g14920/F2G14_40).
Length = 275
Score = 75.1 bits (183), Expect = 7e-13
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGAC-PCYNNWKTKEGGPKC 433
+C P CG+RC + + C+ C CC +C CVPPG YGNK C CY N KT+ G KC
Sbjct: 215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274
Query: 434 P 436
P
Sbjct: 275 P 275
>sptr|Q8LBI7|Q8LBI7 Hypothetical protein.
Length = 275
Score = 75.1 bits (183), Expect = 7e-13
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGAC-PCYNNWKTKEGGPKC 433
+C P CG+RC + + C+ C CC +C CVPPG YGNK C CY N KT+ G KC
Sbjct: 215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274
Query: 434 P 436
P
Sbjct: 275 P 275
>sptr|Q8GWK5|Q8GWK5 Putative gibberellin-regulated protein.
Length = 119
Score = 75.1 bits (183), Expect = 7e-13
Identities = 30/59 (50%), Positives = 34/59 (57%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C C RCSKT +K C C CCAKC CVPPG GN +CPCY + +T KCP
Sbjct: 61 CGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119
>sptr|Q948Z4|Q948Z4 Snakin-1.
Length = 88
Score = 74.3 bits (181), Expect = 1e-12
Identities = 30/59 (50%), Positives = 33/59 (55%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C KC RCSK CL C CC +C CVP G YGNK CPCY + K +G KCP
Sbjct: 30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88
>sptrnew|AAK96495|AAK96495 AT4g09600/T25P22_40.
Length = 99
Score = 73.2 bits (178), Expect = 3e-12
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
+C +C RCSK+ CL CN CC +C CVPPG GN CPCY + T+ G KCP
Sbjct: 40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99
>sw|P46687|GAS3_ARATH Gibberellin-regulated protein 3 precursor.
Length = 99
Score = 73.2 bits (178), Expect = 3e-12
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
+C +C RCSK+ CL CN CC +C CVPPG GN CPCY + T+ G KCP
Sbjct: 40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99
>sptr|O82328|O82328 GAST1/GASA-like protein (Putative
gibberellin-regulated protein).
Length = 108
Score = 70.9 bits (172), Expect = 1e-11
Identities = 29/64 (45%), Positives = 34/64 (53%)
Frame = +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L W C KC RC + + CL C CC C CVP G YGNK C CY + + +G
Sbjct: 46 LEKW-CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGT 104
Query: 425 PKCP 436
PKCP
Sbjct: 105 PKCP 108
>sptr|Q94HA1|Q94HA1 Hypothetical 9.9 kDa protein.
Length = 93
Score = 70.5 bits (171), Expect = 2e-11
Identities = 31/62 (50%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG---PK 430
C KC RCSK CL C CCA C CVP G GNK CPCY + T G PK
Sbjct: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
Query: 431 CP 436
CP
Sbjct: 92 CP 93
>sptr|Q9XGJ3|Q9XGJ3 GEG protein.
Length = 101
Score = 67.8 bits (164), Expect = 1e-10
Identities = 27/59 (45%), Positives = 31/59 (52%)
Frame = +2
Query: 260 CSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
C C +RC + C C CCA+C CVPPG GN+ CPCY N T G KCP
Sbjct: 43 CGAACKARCRLSSRPNLCHRACGTCCARCRCVPPGTSGNQKVCPCYYNMTTHGGRRKCP 101
>sptr|Q93X17|Q93X17 Snakin2 precursor.
Length = 104
Score = 63.9 bits (154), Expect = 2e-09
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
+C C +RC + + C C CCA+C CVPPG GN CPCY + T KCP
Sbjct: 45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
>sptr|Q8L8X0|Q8L8X0 GAST1-like protein.
Length = 98
Score = 63.5 bits (153), Expect = 2e-09
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
+C C +RC ++ + C C CC +C CVPPG YGN C CY + T G KCP
Sbjct: 39 DCXSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,390,810
Number of Sequences: 1272877
Number of extensions: 5518392
Number of successful extensions: 16742
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16516
length of database: 406,886,216
effective HSP length: 118
effective length of database: 256,686,730
effective search space used: 25411986270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)