BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sw|Q9SIK2|R25A_ARATH 40S ribosomal protein S25-1. 122 3e-27
sptrnew|AAQ22726|AAQ22726 40S ribosomal protein S25 (Fragment). 122 6e-27
sw|Q9T029|R25B_ARATH 40S ribosomal protein S25-2. 122 6e-27
sptr|Q8L955|Q8L955 Ribosomal protein S25. 120 2e-26
sw|P46301|RS25_LYCES 40S ribosomal protein S25. 118 7e-26
sptr|Q9SIW5|Q9SIW5 40S ribosomal protein S25. 114 9e-25
sptr|Q8GYL5|Q8GYL5 Putative 40S ribosomal 25S subunit. 114 9e-25
sptr|Q8ISN9|Q8ISN9 Ribosomal protein S25. 100 2e-20
sptrnew|AAH27208|AAH27208 Rps25 protein. 95 8e-19
sptrnew|BAC36806|BAC36806 8 days embryo whole body cDNA, RIKEN f... 95 8e-19
sw|P25111|RS25_HUMAN 40S ribosomal protein S25. 95 8e-19
sw|Q94G66|RS25_AMACR 40S ribosomal protein S25. 95 8e-19
sptr|Q90YP9|Q90YP9 40S ribosomal protein S25. 93 3e-18
sw|P48588|RS25_DROME 40S ribosomal protein S25. 92 5e-18
sptrnew|EAA09243|EAA09243 AgCP14068 (Fragment). 92 5e-18
sptr|Q962Q5|Q962Q5 Ribosomal protein S25. 90 2e-17
sw|P52821|RS25_CAEEL 40S ribosomal protein S25. 88 9e-17
sptr|Q9Y084|Q9Y084 40S ribosomal protein (Fragment). 81 2e-14
sw|Q03409|RS25_DICDI 40S ribosomal protein S25 (S31). 79 4e-14
sptr|Q9N9V4|Q9N9V4 Ribosomal protein S25. 78 1e-13
sw|P07282|RS25_YEAST 40S ribosomal protein S25 precursor (S31) (... 73 3e-12
sptrnew|EAA33995|EAA33995 Hypothetical protein. 71 2e-11
sw|O74172|R25Z_SCHPO 40S ribosomal protein S25-B (S31-B). 70 2e-11
sw|P79009|R25Y_SCHPO 40S ribosomal protein S25-A (S31-A). 69 6e-11
sptr|O15597|O15597 Ribosomal protein S25 (Fragment). 55 1e-06
sptr|Q8ILN8|Q8ILN8 Ribosomal protein S25, putative. 49 6e-05
sptr|Q97ZZ6|Q97ZZ6 SSU ribosomal protein S25E (rps25E). 43 0.005
sptrnew|EAA37192|EAA37192 GLP_243_20188_20454. 37 0.25
sptr|Q8I7T1|Q8I7T1 R1 protein. 35 1.2
sptr|Q8SVN4|Q8SVN4 Hypothetical protein ECU05_0120. 34 2.1
>sw|Q9SIK2|R25A_ARATH 40S ribosomal protein S25-1.
Length = 108
Score = 122 bits (307), Expect = 3e-27
Identities = 60/72 (83%), Positives = 67/72 (93%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQ TYDKLL+E PK+K ITPSILS+R+R+NGSLARRAI++LMAKGLIRMVS H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 386 SSQQIYTRATNT 421
SSQQIYTRATNT
Sbjct: 97 SSQQIYTRATNT 108
>sptrnew|AAQ22726|AAQ22726 40S ribosomal protein S25 (Fragment).
Length = 94
Score = 122 bits (305), Expect = 6e-27
Identities = 60/72 (83%), Positives = 67/72 (93%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLLSE PKYK ITPSILS+RLR+NGSLAR+AI++LMA+G IRMVS H
Sbjct: 23 VNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAH 82
Query: 386 SSQQIYTRATNT 421
+SQQIYTRATNT
Sbjct: 83 ASQQIYTRATNT 94
>sw|Q9T029|R25B_ARATH 40S ribosomal protein S25-2.
Length = 108
Score = 122 bits (305), Expect = 6e-27
Identities = 59/72 (81%), Positives = 68/72 (94%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLL+E PK+K ITPSILS+R+R+NGSLARRAI++LMAKG+IRMV+ H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 386 SSQQIYTRATNT 421
SSQQIYTRATNT
Sbjct: 97 SSQQIYTRATNT 108
>sptr|Q8L955|Q8L955 Ribosomal protein S25.
Length = 108
Score = 120 bits (301), Expect = 2e-26
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKLLSE PK+K ITPSILS+RLR+NGSLARRAI++LMAKG IRMVS H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 386 SSQQIYTRATN 418
SSQQIYTRAT+
Sbjct: 97 SSQQIYTRATH 107
>sw|P46301|RS25_LYCES 40S ribosomal protein S25.
Length = 108
Score = 118 bits (296), Expect = 7e-26
Identities = 57/72 (79%), Positives = 67/72 (93%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFD++TYDKLLSE PKYK ITPS+LS+RLR++GSLAR+AI+DLMA+G IRMVS H
Sbjct: 37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAH 96
Query: 386 SSQQIYTRATNT 421
+SQQIYTRATNT
Sbjct: 97 ASQQIYTRATNT 108
>sptr|Q9SIW5|Q9SIW5 40S ribosomal protein S25.
Length = 125
Score = 114 bits (286), Expect = 9e-25
Identities = 57/70 (81%), Positives = 63/70 (90%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFDQATYDKL+SE PK+K ITPSILS+RLR+NGSLAR+AI+DLM KG IRMVS H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 386 SSQQIYTRAT 415
SSQQI TRAT
Sbjct: 113 SSQQINTRAT 122
>sptr|Q8GYL5|Q8GYL5 Putative 40S ribosomal 25S subunit.
Length = 69
Score = 114 bits (286), Expect = 9e-25
Identities = 57/67 (85%), Positives = 63/67 (94%)
Frame = +2
Query: 218 VLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQ 397
VLFDQATYDKLLSE PK+K ITPSILS+RLR+NGSLARRAI++LMAKG IRMVS HSSQQ
Sbjct: 2 VLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQ 61
Query: 398 IYTRATN 418
IYTRAT+
Sbjct: 62 IYTRATH 68
>sptr|Q8ISN9|Q8ISN9 Ribosomal protein S25.
Length = 123
Score = 100 bits (248), Expect = 2e-20
Identities = 50/80 (62%), Positives = 63/80 (78%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITPS++SERL++ GSLAR A+K+L +KG+I++VS H
Sbjct: 40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKH 99
Query: 386 SSQQIYTRATNT*GVFCVLR 445
S+Q IYTRAT VLR
Sbjct: 100 SAQVIYTRATKDTDSKIVLR 119
>sptrnew|AAH27208|AAH27208 Rps25 protein.
Length = 125
Score = 95.1 bits (235), Expect = 8e-19
Identities = 44/70 (62%), Positives = 59/70 (84%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITP+++SERL++ GSLAR A+++L++KGLI++VS H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 386 SSQQIYTRAT 415
+Q IYTR T
Sbjct: 104 RAQVIYTRNT 113
>sptrnew|BAC36806|BAC36806 8 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:5730411G06
product:ribosomal protein S25, full insert sequence.
Length = 125
Score = 95.1 bits (235), Expect = 8e-19
Identities = 44/70 (62%), Positives = 59/70 (84%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITP+++SERL++ GSLAR A+++L++KGLI++VS H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 386 SSQQIYTRAT 415
+Q IYTR T
Sbjct: 104 RAQVIYTRNT 113
>sw|P25111|RS25_HUMAN 40S ribosomal protein S25.
Length = 125
Score = 95.1 bits (235), Expect = 8e-19
Identities = 44/70 (62%), Positives = 59/70 (84%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITP+++SERL++ GSLAR A+++L++KGLI++VS H
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 386 SSQQIYTRAT 415
+Q IYTR T
Sbjct: 104 RAQVIYTRNT 113
>sw|Q94G66|RS25_AMACR 40S ribosomal protein S25.
Length = 114
Score = 95.1 bits (235), Expect = 8e-19
Identities = 47/71 (66%), Positives = 58/71 (81%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN VLFD AT+DKLLSE K K +T + LSER R+NGSLARRAI++L+++G I+MV H
Sbjct: 36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHH 95
Query: 386 SSQQIYTRATN 418
SS QIYTR+TN
Sbjct: 96 SSLQIYTRSTN 106
>sptr|Q90YP9|Q90YP9 40S ribosomal protein S25.
Length = 124
Score = 93.2 bits (230), Expect = 3e-18
Identities = 43/70 (61%), Positives = 58/70 (82%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITP+++SERL++ GSLAR A+ +L++KG+I++VS H
Sbjct: 43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKH 102
Query: 386 SSQQIYTRAT 415
+Q IYTR T
Sbjct: 103 RAQVIYTRNT 112
>sw|P48588|RS25_DROME 40S ribosomal protein S25.
Length = 117
Score = 92.4 bits (228), Expect = 5e-18
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATY+KL EVP YK ITPS++SERL++ GSLA+RA+ +L KGLI+ V H
Sbjct: 43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQH 102
Query: 386 SSQQIYTRAT 415
SQ IYTRAT
Sbjct: 103 HSQVIYTRAT 112
>sptrnew|EAA09243|EAA09243 AgCP14068 (Fragment).
Length = 142
Score = 92.4 bits (228), Expect = 5e-18
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ATYDKL EVP YK ITPS++SERL++ GSLA+R +++L KGLI++V H
Sbjct: 66 LNNQVLFDKATYDKLYKEVPAYKLITPSVVSERLKIRGSLAKRGLRELCQKGLIKLVVQH 125
Query: 386 SSQQIYTRAT 415
+Q IYTR T
Sbjct: 126 HAQVIYTRTT 135
>sptr|Q962Q5|Q962Q5 Ribosomal protein S25.
Length = 119
Score = 90.1 bits (222), Expect = 2e-17
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFD+ TY+KL EVP+YK ITP+++SERL+V GSLARRA+ +L KGLI+ V H
Sbjct: 43 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 102
Query: 386 SSQQIYTRAT 415
Q IYTRAT
Sbjct: 103 HGQVIYTRAT 112
>sw|P52821|RS25_CAEEL 40S ribosomal protein S25.
Length = 117
Score = 88.2 bits (217), Expect = 9e-17
Identities = 43/70 (61%), Positives = 53/70 (75%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN VLFDQATYDKL EV YK ITPS++SERL+V SLA+ +K+L AKGL++ V H
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99
Query: 386 SSQQIYTRAT 415
Q +YTRAT
Sbjct: 100 HGQVVYTRAT 109
>sptr|Q9Y084|Q9Y084 40S ribosomal protein (Fragment).
Length = 82
Score = 80.9 bits (198), Expect = 2e-14
Identities = 40/70 (57%), Positives = 51/70 (72%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
++N VLFDQATYDKL E+ K ITPS++SERL+V SLA+ + +L KGLI+ V H
Sbjct: 8 LSNMVLFDQATYDKLYKEIISVKLITPSVVSERLKVRASLAKAGLDELHQKGLIKCVVKH 67
Query: 386 SSQQIYTRAT 415
SQ +YTRAT
Sbjct: 68 GSQLVYTRAT 77
>sw|Q03409|RS25_DICDI 40S ribosomal protein S25 (S31).
Length = 110
Score = 79.3 bits (194), Expect = 4e-14
Identities = 37/69 (53%), Positives = 53/69 (76%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NNA+LFD+ TY KLL E+P K IT +++SER++ NGSLARRAIK+L++KGLI+ +
Sbjct: 41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKG 100
Query: 386 SSQQIYTRA 412
+YT+A
Sbjct: 101 HGNGVYTKA 109
>sptr|Q9N9V4|Q9N9V4 Ribosomal protein S25.
Length = 120
Score = 78.2 bits (191), Expect = 1e-13
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+ NAV+FD+ TYDKL SEVPKYK ITPSI+S+RL++ S+A +K L + LIR+VS
Sbjct: 36 LQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCS 95
Query: 386 SSQQIYTR 409
S ++YTR
Sbjct: 96 SKTRVYTR 103
>sw|P07282|RS25_YEAST 40S ribosomal protein S25 precursor (S31)
(YS23) (RP45).
Length = 108
Score = 73.2 bits (178), Expect = 3e-12
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = +2
Query: 212 NAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSS 391
+AV+ DQ YD++L EVP Y+ ++ S+L +RL++ GSLAR A++ L +G+I+ +S HS
Sbjct: 38 HAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSK 97
Query: 392 QQIYTRA 412
Q IYTRA
Sbjct: 98 QAIYTRA 104
>sptrnew|EAA33995|EAA33995 Hypothetical protein.
Length = 97
Score = 70.9 bits (172), Expect = 2e-11
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 212 NAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSS 391
+AV+ D++T DKL +V Y+ +T + L +RL++NGSLARR +KDL KG I+ V HS
Sbjct: 26 HAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSK 85
Query: 392 QQIYTRA 412
+IYTRA
Sbjct: 86 MKIYTRA 92
>sw|O74172|R25Z_SCHPO 40S ribosomal protein S25-B (S31-B).
Length = 88
Score = 70.5 bits (171), Expect = 2e-11
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = +2
Query: 212 NAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSS 391
+A +FD++ D++ EVP +K I+ S+L +R+++NGSLAR AI+DL +G+I+ V HS
Sbjct: 18 HATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSK 77
Query: 392 QQIYTRA 412
Q IYTRA
Sbjct: 78 QAIYTRA 84
>sw|P79009|R25Y_SCHPO 40S ribosomal protein S25-A (S31-A).
Length = 89
Score = 68.9 bits (167), Expect = 6e-11
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = +2
Query: 212 NAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSS 391
+A +FD++ D++ EVP +K I+ S+L +R+++NGSLAR AI+DL +G+I+ V HS
Sbjct: 18 HATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSK 77
Query: 392 QQIYTR 409
Q IYTR
Sbjct: 78 QAIYTR 83
>sptr|O15597|O15597 Ribosomal protein S25 (Fragment).
Length = 129
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/69 (37%), Positives = 44/69 (63%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+NN V+FD+AT DK +VP K ITP ++++R+ + G+L + +K L K LI V V
Sbjct: 39 LNNTVIFDKATLDKCAKDVPSMKVITPPVVADRITITGALGKILLKALDKKELIVPVKVD 98
Query: 386 SSQQIYTRA 412
++++R+
Sbjct: 99 YHIRVFSRS 107
>sptr|Q8ILN8|Q8ILN8 Ribosomal protein S25, putative.
Length = 135
Score = 48.9 bits (115), Expect = 6e-05
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
+N+AV D++ + K+L E K ITPS ++E+ +VN S+AR I L K LI V V
Sbjct: 66 LNHAVFIDKSLHSKIL-ECKNMKVITPSAIAEKYKVNLSVARAVINHLADKKLIAEVCVQ 124
Query: 386 S-SQQIYTR 409
S SQ++YT+
Sbjct: 125 SHSQKLYTK 133
>sptr|Q97ZZ6|Q97ZZ6 SSU ribosomal protein S25E (rps25E).
Length = 110
Score = 42.7 bits (99), Expect = 0.005
Identities = 21/70 (30%), Positives = 42/70 (60%)
Frame = +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
++ AV D+ T K+L E+ K ITP L+ + ++ S+AR+ +K+L + ++++ S +
Sbjct: 41 ISRAVTIDEETKKKVLDEIKKESIITPYALATKSGISISVARKILKELENQNVVKLYSKN 100
Query: 386 SSQQIYTRAT 415
+IY A+
Sbjct: 101 RRLEIYIAAS 110
>sptrnew|EAA37192|EAA37192 GLP_243_20188_20454.
Length = 88
Score = 37.0 bits (84), Expect = 0.25
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +2
Query: 227 DQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYT 406
D+A ++ L + K IT + + ERLRV+ +LA+R ++ L+ G +VS S I+
Sbjct: 23 DEAAMNEALKFIKNSKCITHTQICERLRVSVALAKRVMRQLVKSGDFAIVSKSSRMTIFK 82
Query: 407 RAT 415
T
Sbjct: 83 NMT 85
>sptr|Q8I7T1|Q8I7T1 R1 protein.
Length = 134
Score = 34.7 bits (78), Expect = 1.2
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 220 ALRSGHLR*AALRGAQVQADHPIHPI*APQG*WILGTEGHQGSDGKGAHKD-GLCSF*PA 396
+ R G LR AA R Q +DHP H + +G + G GH G +D P
Sbjct: 15 SFRQGDLRQAACRHPQGSSDHPAHCLRKTEGECVAGASGHPLPQGPRPDQDCRRAPPLPV 74
Query: 397 DIHQGNQHMRGVLRLADVISLDDLM 471
+HQ +Q ++ DV S + L+
Sbjct: 75 HLHQKHQCLK-----VDVSSREQLL 94
>sptr|Q8SVN4|Q8SVN4 Hypothetical protein ECU05_0120.
Length = 654
Score = 33.9 bits (76), Expect = 2.1
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 534 RIFLRLLYYFKIMFFITFKTMLPSKF*SW*GISTNLCSAITIAEVVACVIMNSVLNLKKK 713
RI+ Y+F I ++ KT +P S+ +S N I C ++N VLNLK K
Sbjct: 519 RIYSPGTYFFHIFIYLVLKTWIPVLLVSY-ILSFNFAPIFLITGTFTCSLLNLVLNLKLK 577
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,555,833
Number of Sequences: 1272877
Number of extensions: 6563527
Number of successful extensions: 14262
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14242
length of database: 406,886,216
effective HSP length: 119
effective length of database: 255,413,853
effective search space used: 30138834654
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)